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04302015_34_scaffold_1283

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_1283_1
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..126)
DNA (126bp) protein (42aa)
Microcompartments protein n=2 Tax=root RepID=G0JL92_9GAMM
microcompartments protein
Microcompartments protein {ECO:0000313|EMBL:ACH83615.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Ac
04302015_34_scaffold_1283_2

Not on your lists

comp(159..416)
DNA (258bp) protein (86aa)
Carboxysome polypeptide n=1 Tax=mine drainage metagenome RepID=E6PLS8_9ZZZZ
Carboxysome polypeptide {ECO:0000313|EMBL:CBH95879.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cscB; carboxysome peptide B
04302015_34_scaffold_1283_3

Not on your lists

comp(418..669)
DNA (252bp) protein (84aa)
Carboxysome polypeptide n=1 Tax=mine drainage metagenome RepID=E6PLS7_9ZZZZ
Carboxysome polypeptide {ECO:0000313|EMBL:CBH95878.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
carboxysome protein A
04302015_34_scaffold_1283_4

Not on your lists

comp(690..1145)
DNA (456bp) protein (152aa)
cab2; carboxysome shell carbonic anhydrase (EC:4.2.1.1)
Carboxysome structural polypeptide n=1 Tax=mine drainage metagenome RepID=E6PLS6_9ZZZZ
Carboxysome structural polypeptide {ECO:0000313|EMBL:CBH95877.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_34_scaffold_1283_5

Not on your lists

comp(1133..2221)
DNA (1089bp) protein (363aa)
Carboxysome structural polypeptide n=1 Tax=mine drainage metagenome RepID=E6PLS6_9ZZZZ rbh
Carboxysome structural polypeptide {ECO:0000313|EMBL:CBH95877.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
carboxysome shell carbonic anhydrase
04302015_34_scaffold_1283_6

Not on your lists

comp(2271..4091)
DNA (1821bp) protein (607aa)
Carboxysome structural protein CsoS2 n=1 Tax=uncultured prokaryote RepID=M1GLA1_9ZZZZ rbh
Carboxysome structural protein CsoS2 {ECO:0000313|EMBL:AGE14107.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
carboxysome structural protein CsoS2
04302015_34_scaffold_1283_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4342..4605)
DNA (264bp) protein (88aa)
ribulose bisphosphate carboxylase small chain; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
Ribulose bisphosphate carboxylase small chain n=2 Tax=root RepID=G0JL97_9GAMM
Ribulose bisphosphate carboxylase small chain {ECO:0000313|EMBL:AEM49212.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithioba
04302015_34_scaffold_1283_8

Not on your lists

comp(4686..6107)
DNA (1422bp) protein (474aa)
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (RuBisCO large subunit) {ECO:0000313|EMBL:CBH95874.1}; EC=4.1.1.39 {ECO:0000313|EMBL:CBH95874.1};; TaxID=410659 species="unclassified sequ
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39); K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (RuBisCO large subunit) n=2 Tax=mine drainage metagenome RepID=E6PLS3_9ZZZZ rbh
04302015_34_scaffold_1283_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6419..7390
DNA (972bp) protein (324aa)
CbbR n=1 Tax=uncultured bacterium DX-8J-22 RepID=M1L7E7_9BACT
cbbR; rubisco operon transcriptional regulator
CbbR {ECO:0000313|EMBL:AAD30507.1}; TaxID=920 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxi
04302015_34_scaffold_1283_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9506..10369)
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKU0_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96682.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
04302015_34_scaffold_1283_11
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10500..11078
DNA (579bp) protein (193aa)
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methy
aspartate kinase n=1 Tax=Methylotenera mobilis RepID=UPI00037F5FF6
04302015_34_scaffold_1283_12

Not on your lists

11072..11710
DNA (639bp) protein (213aa)
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4]
Aspartate kinase, monofunctional class n=1 Tax=mine drainage metagenome RepID=T1AGI8_9ZZZZ
Aspartate kinase, monofunctional class {ECO:0000313|EMBL:EQD40124.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_34_scaffold_1283_trna_1
unknown

Not on your lists

11749..11838
DNA (90bp)
transferRNA
04302015_34_scaffold_1283_13
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12420..13085)
DNA (666bp) protein (222aa)
Secretion protein HlyD family protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXB6_METML
secretion protein HlyD family protein; K15548 p-hydroxybenzoic acid efflux pump subunit AaeA
Secretion protein HlyD family protein {ECO:0000313|EMBL:ACT48565.1}; Flags: Precursor;; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylote
04302015_34_scaffold_1283_14
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13109..13348)
DNA (240bp) protein (80aa)
HlyD family secretion protein n=3 Tax=Azotobacter vinelandii RepID=C1DJ71_AZOVD
HlyD family secretion protein
HlyD family secretion protein {ECO:0000313|EMBL:AGK19268.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter
04302015_34_scaffold_1283_15
Arcobacter sp. L, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13355..13555)
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Arcobacter sp. L RepID=G2HZJ2_9PROT
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK74441.1}; TaxID=944547 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arco
04302015_34_scaffold_1283_16
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13552..15621)
DNA (2070bp) protein (690aa)
Fusaric acid resistance protein conserved region n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXB8_METML rbh
fusaric acid resistance protein rbh
Fusaric acid resistance protein conserved region {ECO:0000313|EMBL:ACT48567.1}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;"
04302015_34_scaffold_1283_17
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15618..17027)
DNA (1410bp) protein (470aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXB9_METML rbh
NodT family RND efflux system outer membrane lipoprotein rbh
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ACT48568.1}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylo
04302015_34_scaffold_1283_18
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17040..17543)
DNA (504bp) protein (168aa)
Transcriptional regulator, MarR family n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DLD0_METS0
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADI30601.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Me
04302015_34_scaffold_1283_trna_2
unknown

Not on your lists

comp(17737..17810)
DNA (74bp)
transferRNA
04302015_34_scaffold_1283_19
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18666..19295
DNA (630bp) protein (210aa)
cAMP-binding protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WKK3_9BURK
cAMP-binding protein {ECO:0000313|EMBL:EHR72470.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
cAMP-binding protein
04302015_34_scaffold_1283_20
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19301..19633)
DNA (333bp) protein (111aa)
putative oxalyl-CoA decarboxylase; K01577 oxalyl-CoA decarboxylase [EC:4.1.1.8]
Oxalyl-CoA decarboxylase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WKK2_9BURK
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
04302015_34_scaffold_1283_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19638..21044)
DNA (1407bp) protein (469aa)
putative oxalyl-CoA decarboxylase (EC:4.1.1.8); K01577 oxalyl-CoA decarboxylase [EC:4.1.1.8]
Thiamine pyrophosphate enzyme-like TPP binding region n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q129S6_POLSJ rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
04302015_34_scaffold_1283_22
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21161..22093)
DNA (933bp) protein (311aa)
formyl transferase domain-containing protein (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Formyl transferase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFX4_METNO rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
04302015_34_scaffold_1283_23
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22772..23821)
DNA (1050bp) protein (350aa)
Putative oxalate/formate antiporter n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8Y1_COLFT rbh
putative oxalate/formate antiporter; K08177 MFS transporter, OFA family, oxalate/formate antiporter
Putative oxalate/formate antiporter {ECO:0000313|EMBL:AEK61844.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimo
04302015_34_scaffold_1283_24
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23832..24038)
DNA (207bp) protein (69aa)
Oxalate/formate antiporter n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZBC4_AZOL4
oxlT; oxalate/formate antiporter; K08177 MFS transporter, OFA family, oxalate/formate antiporter
Oxalate/formate antiporter {ECO:0000313|EMBL:CBS88584.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum
04302015_34_scaffold_1283_25
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24252..24491)
DNA (240bp) protein (80aa)
fdsD2; NAD-dependent formate dehydrogenase subunit delta (EC:1.2.1.2); K00126 formate dehydrogenase, delta subunit [EC:1.2.1.2]
NAD-dependent formate dehydrogenase delta subunit {ECO:0000313|EMBL:AEK61837.1}; EC=1.2.1.2 {ECO:0000313|EMBL:AEK61837.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
NAD-dependent formate dehydrogenase delta subunit n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8X4_COLFT
04302015_34_scaffold_1283_26
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24488..25333)
DNA (846bp) protein (282aa)
Protein FdhD homolog n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X738_OXAFO
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187}; TaxID=556268 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Oxalobacter.;" source="Oxalobacter formig
fdsC; hypothetical protein; K02379 FdhD protein
04302015_34_scaffold_1283_27
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25333..26940)
DNA (1608bp) protein (536aa)
fdhF, fdsA; NAD-dependent formate dehydrogenase subunit alpha (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase subunit alpha n=2 Tax=Pandoraea RepID=V5UJJ4_9BURK
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:AHB77111.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandorae
04302015_34_scaffold_1283_28
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26937..28100)
DNA (1164bp) protein (388aa)
formate dehydrogenase, alpha subunit (EC:1.2.1.2)
formate dehydrogenase subunit alpha n=1 Tax=Variovorax paradoxus RepID=UPI000378222E
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EEG08678.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="
Displaying items 1-30 of 55 in total

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