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04302015_34_scaffold_833

Search features with annotation key words

Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_833_1
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..361)
DNA (360bp) protein (120aa)
ATPase component of ABC transporter (Fragment) n=1 Tax=uncultured bacterium RepID=Q5NTF7_9BACT
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3
Tax=BJP_IG2103_Dechloromonas_63_51
04302015_34_scaffold_833_2
unknown

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577..1005
DNA (429bp) protein (143aa)

This feature has no annotations

04302015_34_scaffold_833_3
unknown

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comp(1769..2074)
DNA (306bp) protein (102aa)

This feature has no annotations

04302015_34_scaffold_833_4
unknown

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comp(2542..2817)
DNA (276bp) protein (92aa)

This feature has no annotations

04302015_34_scaffold_833_5
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3335..4825
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQ46_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL95133.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
04302015_34_scaffold_833_6
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4822..6060
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQ47_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL95134.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
04302015_34_scaffold_833_7
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6067..7446
DNA (1380bp) protein (460aa)
DEAD/DEAH box helicase n=1 Tax=Limnobacter sp. MED105 RepID=A6GNN4_9BURK
putative ATP-dependent RNA helicase
DEAD/DEAH box helicase {ECO:0000313|EMBL:EDM84322.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED1
04302015_34_scaffold_833_8
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7490..8278
DNA (789bp) protein (263aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
DEAD/DEAH box helicase n=1 Tax=Limnobacter sp. MED105 RepID=A6GNN4_9BURK
DEAD/DEAH box helicase {ECO:0000313|EMBL:EDM84322.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED1
04302015_34_scaffold_833_9

Not on your lists

comp(8733..8999)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTF8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10530.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_34_scaffold_833_10

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comp(8983..9282)
DNA (300bp) protein (100aa)
Protein containing DUF497 n=1 Tax=mine drainage metagenome RepID=T1AWT7_9ZZZZ
Protein containing DUF497 {ECO:0000313|EMBL:EQD45159.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K09803 hypothetical protein
04302015_34_scaffold_833_11
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9753..9974
DNA (222bp) protein (74aa)
3-methyladenine DNA glycosylase; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
3-methyladenine DNA glycosylase n=1 Tax=Marinobacterium stanieri RepID=UPI0002559E29
3-methyladenine DNA glycosylase {ECO:0000313|EMBL:KGM40447.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
04302015_34_scaffold_833_12

Not on your lists

comp(10097..10492)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQ09_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09330.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K03630 DNA repair protein RadC
04302015_34_scaffold_833_13
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10905..11150
DNA (246bp) protein (82aa)
Conjugal transfer protein TrbC n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2K3_THIK1
putative conjugal transfer protein TrbC
Conjugal transfer protein TrbC {ECO:0000313|EMBL:CDW92542.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_34_scaffold_833_14
unknown

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11161..11673
DNA (513bp) protein (171aa)

This feature has no annotations

04302015_34_scaffold_833_15
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11670..11969
DNA (300bp) protein (100aa)
Conjugal transfer TrbD family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2K1_THIK1
Conjugal transfer TrbD family protein; K03198 type IV secretion system protein VirB3
Conjugal transfer TrbD family protein {ECO:0000313|EMBL:ADG31334.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (stra
04302015_34_scaffold_833_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11969..13633
DNA (1665bp) protein (555aa)
Putative Type IV secretory pathway, VirB4 component (CagE, TrbE, VirB ) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUJ5_THIA3
Type IV secretory pathway, VirB4 component (CagE, TrbE, VirB ) {ECO:0000313|EMBL:CDW96092.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="
putative Type IV secretory pathway, VirB4 component (CagE, TrbE, VirB )
04302015_34_scaffold_833_17
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13630..14316
DNA (687bp) protein (229aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2K0_THIK1
Type IV secretory pathway, VirB4 component (CagE, TrbE, VirB ) {ECO:0000313|EMBL:CDW96092.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="
CagE, TrbE, VirB component of type IV transporter system; K03199 type IV secretion system protein VirB4
04302015_34_scaffold_833_18
unknown

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14318..14542
DNA (225bp) protein (75aa)

This feature has no annotations

04302015_34_scaffold_833_19
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14561..15436
DNA (876bp) protein (292aa)
Cell wall surface anchor family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2J9_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW96091.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
cell wall surface anchor family protein
04302015_34_scaffold_833_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15482..15928
DNA (447bp) protein (149aa)
Cell wall surface anchor family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2J9_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW96091.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
cell wall surface anchor family protein
04302015_34_scaffold_833_21
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15940..16680
DNA (741bp) protein (247aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2J8_THIK1
P-type conjugative transfer protein TrbJ
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:CDW92537.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_34_scaffold_833_22
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16737..18047
DNA (1311bp) protein (437aa)
P-type conjugative transfer protein TrbL n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2J7_THIK1 rbh
P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ADG31330.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (s
04302015_34_scaffold_833_23
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18066..18305
DNA (240bp) protein (80aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31329.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiob
04302015_34_scaffold_833_24
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18298..18954
DNA (657bp) protein (219aa)
Conjugal transfer protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2J1_THIK1 rbh
Putative Conjugal transfer protein TrbF {ECO:0000313|EMBL:CDW96352.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Conjugal transfer protein; K03200 type IV secretion system protein VirB5
04302015_34_scaffold_833_25

Not on your lists

18969..19688
DNA (720bp) protein (240aa)
Conjugal transfer protein TrbG/VirB9/CagX (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6PKK9_9ZZZZ rbh
Conjugal transfer protein TrbG/VirB9/CagX (Modular protein) {ECO:0000313|EMBL:CBH95460.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage me
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
04302015_34_scaffold_833_26
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19685..19876
DNA (192bp) protein (64aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2G6_THIK1
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:ADG31299.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thi
04302015_34_scaffold_833_27
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19885..21405
DNA (1521bp) protein (507aa)
Conjugation TrbI family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2G5_THIK1 rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:CDW96349.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
04302015_34_scaffold_833_28
unknown

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comp(21434..21697)
DNA (264bp) protein (88aa)

This feature has no annotations

04302015_34_scaffold_833_trna_1
unknown

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comp(21899..21971)
DNA (73bp)
transferRNA
04302015_34_scaffold_833_29
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22101..23306)
DNA (1206bp) protein (402aa)
tyrB; aromatic amino acid aminotransferase (EC:2.6.1.57); K00832 aromatic-amino-acid transaminase [EC:2.6.1.57]
Aromatic-amino-acid transaminase {ECO:0000313|EMBL:ABR88893.1}; EC=2.6.1.57 {ECO:0000313|EMBL:ABR88893.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxaloba
Aromatic-amino-acid transaminase n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SXE0_JANMA rbh
Displaying items 1-30 of 41 in total

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