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04302015_34_scaffold_412

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_412_1
Vibrio metoecus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..531
DNA (531bp) protein (177aa)
exonuclease; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
Exonuclease, RNase T and DNA polymerase III n=1 Tax=Shewanella sp. (strain W3-18-1) RepID=A1RGY9_SHESW
Exonuclease {ECO:0000313|EMBL:KDO15155.1}; TaxID=1481663 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio metoecus.;"
04302015_34_scaffold_412_2
Vibrio harveyi, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

623..1834
DNA (1212bp) protein (404aa)
hypothetical protein; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=669 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrio
ATP-dependent RNA helicase RhlE n=1 Tax=Vibrio azureus NBRC 104587 RepID=U3CIV5_9VIBR rbh
04302015_34_scaffold_412_3
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1883..3220
DNA (1338bp) protein (446aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BPV5_9GAMM rbh
04302015_34_scaffold_412_4
Grimontia hollisae, Grimontia, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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3217..3897
DNA (681bp) protein (227aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I6S0_GRIHO
04302015_34_scaffold_412_5
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3972..5630
DNA (1659bp) protein (553aa)
30S ribosomal protein S1 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCJ9_THICA rbh
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioal
04302015_34_scaffold_412_6
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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5793..6098
DNA (306bp) protein (102aa)
Integration host factor subunit beta n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A484_METMM
Integration host factor subunit beta; K05788 integration host factor subunit beta
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=857087 species="Bacteria; Proteobacteria
04302015_34_scaffold_412_7
unknown

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6324..6524
DNA (201bp) protein (67aa)

This feature has no annotations

04302015_34_scaffold_412_8
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

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6521..7231
DNA (711bp) protein (237aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase
pyrF; PyrF (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KIU1_9GAMM
04302015_34_scaffold_412_9
Pseudomonas moraviensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7235..8572
DNA (1338bp) protein (446aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0
rumA; 23S rRNA 5-methyluridine methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA methyltransferase n=1 Tax=Pseudomonas fluorescens RepID=UPI000319D48C
04302015_34_scaffold_412_10
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8597..9091
DNA (495bp) protein (165aa)
Adenylate cyclase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQE8_PSEUP
adenylate cyclase
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
04302015_34_scaffold_412_11
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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9066..10400
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035DA24D
Channel protein TolC {ECO:0000313|EMBL:AHF01271.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimi
TolC family type I secretion outer membrane protein; K12340 outer membrane channel protein
04302015_34_scaffold_412_12
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10403..11917
DNA (1515bp) protein (505aa)
ABC-type transporter, periplasmic subunit n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCD8_THICA rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDN95234.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" sour
ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
04302015_34_scaffold_412_13
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11919..12401
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI000374DA24
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:CEN56109.1}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bac
ErfK/YbiS/YcfS/YnhG family protein
04302015_34_scaffold_412_14
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12398..13063
DNA (666bp) protein (222aa)
ATP-binding cassette superfamily transporter, permease component n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31G29_THICR
binding-protein dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
ATP-binding cassette superfamily transporter, permease component {ECO:0000313|EMBL:ABB41894.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae;
Displaying 14 items

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