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04302015_35_scaffold_336

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_35_scaffold_336_1
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1316)
DNA (1314bp) protein (438aa)
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Polaromonas sp. CF318 RepID=J2L5Q9_9BURK
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:EJL87600.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_35_scaffold_336_2
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1354..3393)
DNA (2040bp) protein (680aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] rbh
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Polaromonas sp. CF318 RepID=J3D9X0_9BURK rbh
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:EJL87601.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_35_scaffold_336_3
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3399..3707)
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K n=1 Tax=Polaromonas sp. CF318 RepID=J2U8T7_9BURK
04302015_35_scaffold_336_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3704..4375)
DNA (672bp) protein (224aa)
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] rbh
NADH dehydrogenase subunit J {ECO:0000313|EMBL:ABE45161.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABE45161.1};; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
NADH dehydrogenase subunit J n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q127Y1_POLSJ rbh
04302015_35_scaffold_336_5
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4423..4920)
DNA (498bp) protein (166aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit I n=1 Tax=Polaromonas sp. CF318 RepID=J3D9T9_9BURK rbh
04302015_35_scaffold_336_6
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5144..6223)
DNA (1080bp) protein (360aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=NUOH_POLSJ rbh
04302015_35_scaffold_336_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6220..8388)
DNA (2169bp) protein (723aa)
NADH dehydrogenase subunit G (EC:1.6.5.3); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH dehydrogenase subunit G {ECO:0000313|EMBL:ABE45164.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABE45164.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
NADH dehydrogenase subunit G n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q127X8_POLSJ
04302015_35_scaffold_336_8
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8406..9809)
DNA (1404bp) protein (468aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] rbh
NADH dehydrogenase subunit F {ECO:0000313|EMBL:ABE45165.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABE45165.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
NADH dehydrogenase subunit F n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q127X7_POLSJ rbh
04302015_35_scaffold_336_9
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9806..10300)
DNA (495bp) protein (165aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH-quinone oxidoreductase, E subunit n=1 Tax=Polaromonas sp. CF318 RepID=J2LQL0_9BURK
NADH-quinone oxidoreductase, E subunit {ECO:0000313|EMBL:EJL87608.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_35_scaffold_336_10
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10329..11582)
DNA (1254bp) protein (418aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
NADH dehydrogenase subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit D n=1 Tax=Polaromonas sp. CF318 RepID=J3D9U2_9BURK rbh
04302015_35_scaffold_336_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11643..12275)
DNA (633bp) protein (211aa)
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit C {ECO:0000255|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000255|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000255|HAMAP-Rule:MF_01357}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=NUOC_POLNA rbh
04302015_35_scaffold_336_12
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12275..12754)
DNA (480bp) protein (160aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
NADH dehydrogenase subunit B (EC:1.6.99.3); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit B n=1 Tax=Polaromonas sp. CF318 RepID=J3D9X5_9BURK rbh
04302015_35_scaffold_336_13
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12853..13212)
DNA (360bp) protein (120aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
NADH-ubiquinone/plastoquinone oxidoreductase subunit 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit A n=1 Tax=Polaromonas sp. CF318 RepID=J2U8U4_9BURK
04302015_35_scaffold_336_trna_1
unknown

Not on your lists

comp(13339..13420)
DNA (82bp)
transferRNA
04302015_35_scaffold_336_14
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13536..13952)
DNA (417bp) protein (139aa)
Protein translocase, SecG subunit n=1 Tax=Polaromonas sp. CF318 RepID=J2LQL5_9BURK
Protein translocase, SecG subunit {ECO:0000313|EMBL:EJL87613.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
04302015_35_scaffold_336_15
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13989..14744)
DNA (756bp) protein (252aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=1 Tax=Polaromonas sp. CF318 RepID=J3D9U5_9BURK rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
04302015_35_scaffold_336_16
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14741..15745)
DNA (1005bp) protein (335aa)
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VM57_POLNA
alcohol dehydrogenase
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:ABM36735.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_35_scaffold_336_17
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15824..17941)
DNA (2118bp) protein (706aa)
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] rbh
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=PNP_POLNA rbh
04302015_35_scaffold_336_18
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18164..18430)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Polaromonas sp. CF318 RepID=J2U8U8_9BURK
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
04302015_35_scaffold_336_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18564..19763)
DNA (1200bp) protein (400aa)
aspartate aminotransferase (EC:2.6.1.-)
Aminotransferase {ECO:0000313|EMBL:ABE45176.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABE45176.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Aminotransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q127W6_POLSJ
04302015_35_scaffold_336_20
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20104..20517
DNA (414bp) protein (138aa)
Heat shock protein Hsp20 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q127W4_POLSJ
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABE45178.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_35_scaffold_336_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20603..21670)
DNA (1068bp) protein (356aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1144318 species="Bacteria; Proteobacteria; Betapro
putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] rbh
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Polaromonas sp. CF318 RepID=J3D9Y1_9BURK rbh
04302015_35_scaffold_336_22
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21801..22433
DNA (633bp) protein (211aa)
Response regulator with putative antiterminator output domain n=1 Tax=Polaromonas sp. CF318 RepID=J2U8V2_9BURK rbh
Response regulator with putative antiterminator output domain {ECO:0000313|EMBL:EJL87622.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
response regulator receiver/ANTAR domain-containing protein; K07183 response regulator NasT rbh
04302015_35_scaffold_336_23
unknown

Not on your lists

22772..22855
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 24 items

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