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04302015_35_scaffold_540

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_35_scaffold_540_1
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..185)
DNA (183bp) protein (61aa)
TIGR00730 family protein n=1 Tax=Polaromonas sp. CF318 RepID=J2KSH7_9BURK
hypothetical protein; K06966
TIGR00730 family protein {ECO:0000313|EMBL:EJL83040.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_35_scaffold_540_2
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(197..664)
DNA (468bp) protein (156aa)
diacylglycerol kinase (EC:2.7.1.107); K00901 diacylglycerol kinase [EC:2.7.1.107]
Diacylglycerol kinase n=1 Tax=Polaromonas sp. CF318 RepID=J3D293_9BURK
Diacylglycerol kinase {ECO:0000313|EMBL:EJL83041.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_35_scaffold_540_3
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(738..1268)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B56_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE44236.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_35_scaffold_540_4
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1466..2155)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2LD26_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL83043.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
04302015_35_scaffold_540_5
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2317..2742)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3D1Z3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL83044.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
04302015_35_scaffold_540_6
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2739..3305)
DNA (567bp) protein (189aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6); K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Polaromonas sp. CF318 RepID=J2KSI2_9BURK
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL83045.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_35_scaffold_540_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3629..5407
DNA (1779bp) protein (593aa)
acetolactate synthase 3 catalytic subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Polaromonas sp. CF318 RepID=J3D296_9BURK
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EJL83046.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_35_scaffold_540_8
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5575..6066
DNA (492bp) protein (164aa)
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6] rbh
Acetolactate synthase, small subunit {ECO:0000313|EMBL:ABE44241.1}; EC=2.2.1.6 {ECO:0000313|EMBL:ABE44241.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Acetolactate synthase, small subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B51_POLSJ rbh
04302015_35_scaffold_540_9
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6204..7220
DNA (1017bp) protein (339aa)
ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] rbh
Ketol-acid reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00435}; EC=1.1.1.86 {ECO:0000255|HAMAP-Rule:MF_00435};; Acetohydroxy-acid isomeroreductase {ECO:0000255|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00435}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Ketol-acid reductoisomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=ILVC_POLSJ rbh
04302015_35_scaffold_540_10
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7435..8247
DNA (813bp) protein (271aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8); K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:ABM37033.1}; EC=2.7.8.8 {ECO:0000313|EMBL:ABM37033.1};; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VN05_POLNA
04302015_35_scaffold_540_11
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8455..10149
DNA (1695bp) protein (565aa)
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
2-isopropylmalate synthase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B48_POLSJ rbh
04302015_35_scaffold_540_12
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10196..11734
DNA (1539bp) protein (513aa)
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
2-isopropylmalate synthase {ECO:0000255|HAMAP-Rule:MF_01025}; EC=2.3.3.13 {ECO:0000255|HAMAP-Rule:MF_01025};; Alpha-IPM synthase {ECO:0000255|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000255|HAMAP-Rule:MF_01025}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
2-isopropylmalate synthase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=LEU1_POLSJ rbh
04302015_35_scaffold_540_13
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11936..12997
DNA (1062bp) protein (354aa)
murein-DD-endopeptidase; K07262 D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
Murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B46_POLSJ
Murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 {ECO:0000313|EMBL:ABE44246.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_35_scaffold_540_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13187..13966)
DNA (780bp) protein (260aa)
Transcriptional regulator, IclR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B45_POLSJ
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABE44247.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_35_scaffold_540_15
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14028..14816)
DNA (789bp) protein (263aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8] rbh
Putative arginyl-tRNA--protein transferase {ECO:0000255|HAMAP-Rule:MF_00689}; Short=Arginyltransferase {ECO:0000255|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000255|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000255|HAMAP-Rule:MF_00689};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Putative arginyl-tRNA--protein transferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=ATE_POLSJ rbh
04302015_35_scaffold_540_16
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14813..15193)
DNA (381bp) protein (127aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strai
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VN10_POLNA
04302015_35_scaffold_540_trna_1
unknown

Not on your lists

15823..15895
DNA (73bp)
transferRNA
04302015_35_scaffold_540_17
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16103..17308
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000371AA34 rbh
glucose/sorbosone dehydrogenase-like protein rbh
Glucose/sorbosone dehydrogenases-like protein {ECO:0000313|EMBL:AEG94515.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
04302015_35_scaffold_540_18
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17295..17894
DNA (600bp) protein (200aa)
Cytochrome c4-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZF7_RAMTT
cytochrome c4
Cytochrome c4-like protein {ECO:0000313|EMBL:AEG94514.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
04302015_35_scaffold_540_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18084..18968
DNA (885bp) protein (295aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ABE44254.1}; EC=2.7.4.7 {ECO:0000313|EMBL:ABE44254.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Phosphomethylpyrimidine kinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B38_POLSJ
04302015_35_scaffold_540_20
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18913..19845)
DNA (933bp) protein (311aa)
Purine-cytosine permease-like transporter n=1 Tax=Polaromonas sp. CF318 RepID=J3D2A4_9BURK
Purine-cytosine permease-like transporter {ECO:0000313|EMBL:EJL83061.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
cytosine/purines, uracil, thiamine, allantoin permease
04302015_35_scaffold_540_21
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19838..20080)
DNA (243bp) protein (81aa)
Permease for cytosine/purines, uracil, thiamine, allantoin n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ13_POLNA
cytosine/purines uracil thiamine allantoin permease
Permease for cytosine/purines, uracil, thiamine, allantoin {ECO:0000313|EMBL:ABM37741.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_35_scaffold_540_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20387..21487)
DNA (1101bp) protein (367aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Ferredoxin--NADP reductase {ECO:0000255|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000255|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000255|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000255|HAMAP-Rule:MF_01685};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Ferredoxin--NADP reductase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=FENR_POLSJ rbh
04302015_35_scaffold_540_23
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21542..21889)
DNA (348bp) protein (116aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B35_POLSJ
4Fe-4S ferredoxin; K05524 ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:ABE44257.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Displaying 24 items

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