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04302015_35_scaffold_394

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_35_scaffold_394_1
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..2832
DNA (2832bp) protein (944aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
ATP-dependent endonuclease n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GIQ1_9SPHN rbh
UvrD/REP helicase rbh
04302015_35_scaffold_394_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3001..3753
DNA (753bp) protein (251aa)
Metallophosphoesterase n=1 Tax=Nitratireductor indicus C115 RepID=K2NSS8_9RHIZ
Metallophosphoesterase {ECO:0000313|EMBL:EKF42410.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
metallophosphoesterase
04302015_35_scaffold_394_3
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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3854..5011
DNA (1158bp) protein (386aa)
Carbamoyl transferase n=1 Tax=planctomycete KSU-1 RepID=I3IIS6_9PLAN
Carbamoyl transferase {ECO:0000313|EMBL:GAB61621.1}; TaxID=247490 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
putative carbamoyl transferase, NodU family
04302015_35_scaffold_394_4
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5144..5335
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00036C355A
Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain {ECO:0000313|EMBL:BAO82898.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
04302015_35_scaffold_394_5
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5405..6910
DNA (1506bp) protein (502aa)
DNA-cytosine methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
DNA-cytosine methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXT9_9GAMM rbh
Site-specific DNA methylase {ECO:0000313|EMBL:BAO82897.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
04302015_35_scaffold_394_6
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7221..9428
DNA (2208bp) protein (736aa)
RNA polymerase sigma factor n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y921_KETVW rbh
rpoD; RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
04302015_35_scaffold_394_7
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9433..10932
DNA (1500bp) protein (500aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9Y922_KETVW
ATPase {ECO:0000313|EMBL:KGB82755.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
hypothetical protein
04302015_35_scaffold_394_8
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10932..13802
DNA (2871bp) protein (957aa)
Endonuclease n=2 Tax=Ketogulonicigenium vulgare RepID=E3F299_KETVY
Endonuclease {ECO:0000313|EMBL:KGB82756.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
Endonuclease
04302015_35_scaffold_394_9
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13786..14790
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B3T7_PARDP
Uncharacterized protein {ECO:0000313|EMBL:KGB82757.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
hypothetical protein
04302015_35_scaffold_394_10
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14792..16591
DNA (1800bp) protein (600aa)
Uncharacterized protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y925_KETVW
AIPR protein {ECO:0000313|EMBL:KGB82758.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
hypothetical protein
04302015_35_scaffold_394_11
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16734..17192
DNA (459bp) protein (153aa)
DNA mismatch endonuclease Vsr (EC:3.1.-.-); K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
DNA glycosylase n=1 Tax=Amorphus coralli RepID=UPI00036F549B
DNA mismatch repair protein Vsr {ECO:0000313|EMBL:KGB82760.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
04302015_35_scaffold_394_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17546..18475)
DNA (930bp) protein (310aa)
Integrase catalytic region n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBT7_XANP2 rbh
integrase catalytic subunit rbh
Integrase catalytic region {ECO:0000313|EMBL:ABS65480.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
04302015_35_scaffold_394_13
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18469..18735)
DNA (267bp) protein (89aa)
Transposase IS3/IS911 family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBT6_XANP2
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ABS65479.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
04302015_35_scaffold_394_14
unknown

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19859..20317
DNA (459bp) protein (153aa)

This feature has no annotations

Displaying 14 items

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