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04302015_37_scaffold_124

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_124_1
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..544
DNA (543bp) protein (181aa)
Putative sugar ABC transporter, sugar-binding protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q606S4_METCA
sugar ABC transporter sugar-binding protein
Putative sugar ABC transporter, sugar-binding protein {ECO:0000313|EMBL:AAU92062.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
04302015_37_scaffold_124_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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541..1452
DNA (912bp) protein (304aa)
ABC-type sugar transport system permease subunit; K10189 lactose/L-arabinose transport system permease protein id=24457718 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
ABC-type sugar transport system permease subunit rbh
Tax=RBG_16_RIF_WS3X_71_46_curated
04302015_37_scaffold_124_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1449..2270
DNA (822bp) protein (274aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSX8_PSEUU id=5223540 bin=16ft_combo_ws3_JS1 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
sugar ABC transporter permease rbh
Tax=RBG_16_RIF_WS3X_71_46_curated
04302015_37_scaffold_124_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2267..5488
DNA (3222bp) protein (1074aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTW7_PSEUP id=5223539 bin=16ft_combo_ws3_JS1 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
hypothetical protein rbh
Tax=RBG_16_RIF_WS3X_71_46_curated
04302015_37_scaffold_124_5
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

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5485..5868
DNA (384bp) protein (128aa)
Predicted peptidase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EYD0_9BACT
Predicted peptidase
Predicted peptidase {ECO:0000313|EMBL:CCW36635.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
04302015_37_scaffold_124_6
CG_Arma_01, Armatimonadetes, Bacteria

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5872..6093
DNA (222bp) protein (74aa)
Tax=CG_Arma_01
04302015_37_scaffold_124_7
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6107..7483)
DNA (1377bp) protein (459aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Beta-glucosidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC45_9GAMM rbh
beta-galactosidase rbh
04302015_37_scaffold_124_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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7669..10095
DNA (2427bp) protein (809aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54172.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Glycosyltransferase 36 id=4594099 bin=GWC2_Ignavibacteria_56_12 species=Petrotoga mobilis genus=Petrotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome rbh
glycosyl transferase family protein rbh
04302015_37_scaffold_124_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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10146..13709
DNA (3564bp) protein (1188aa)
2-oxoglutarate dehydrogenase, E1 subunit n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y6U8_THEBD rbh
2-oxoglutarate dehydrogenase, E1 subunit rbh
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_124_10
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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13815..14906
DNA (1092bp) protein (364aa)
hypothetical protein id=14430534 bin=bin3_NC10 species=Pseudogulbenkiania ferrooxidans genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_124_11
unknown

Not on your lists

comp(14956..15399)
DNA (444bp) protein (148aa)

This feature has no annotations

04302015_37_scaffold_124_12
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

15675..16820
DNA (1146bp) protein (382aa)
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PA82_9DELT rbh
ABC transporter ATPase rbh
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_124_13
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16772..18610)
DNA (1839bp) protein (613aa)
Polysulfide reductase id=2293102 bin=GWB2_Ignavibacteria_35_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good rbh
polysulfide reductase NrfD
Tax=RBG_16_Anaeromyxobacter_69_14_curated
Also looks like HybB, and it has multiheme (6 motifs) cytochrome domain in the C-terminus that are outside the NrfD/HybB domain region. Rose Kantor (10/29/16)
04302015_37_scaffold_124_14
RBG_13_ACD39_59_9_curated, ACD39, Bacteria

Not on your lists

comp(18600..19406)
DNA (807bp) protein (269aa)
Fe-S-cluster-containing hydrogenase component id=2317094 bin=GWA2_Ignavibacteria-rel_35_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria rbh
HybA; Fe-S-cluster-containing hydrogenase components 1
Tax=RBG_13_ACD39_59_9_curated
04302015_37_scaffold_124_15
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(19403..20107)
DNA (705bp) protein (235aa)
Putative uncharacterized protein id=2293100 bin=GWB2_Ignavibacteria_35_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hmc operon protein 5
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
04302015_37_scaffold_124_16
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(20104..21561)
DNA (1458bp) protein (486aa)
Putative uncharacterized protein id=2293096 bin=GWB2_Ignavibacteria_35_12 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good rbh
hypothetical protein
Tax=BJP_IG2158_Zixibacteria_48_33
"reductase" or GplC, blast results not informative other than that the nearest organisms are sulfate reducers Rose Kantor (10/29/16)
04302015_37_scaffold_124_17
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22256..23449
DNA (1194bp) protein (398aa)
sulfite reductase, dissimilatory-type alpha subunit (EC:1.8.99.3) rbh
Dissimilatory sulfite reductase subunit A n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBR8_9BACT rbh
Tax=RBG_16_Anaeromyxobacter_69_14_curated
04302015_37_scaffold_124_18
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23474..24553
DNA (1080bp) protein (360aa)
sulfite reductase, dissimilatory-type subunit beta (EC:1.8.99.3) rbh
Dissimilatory sulfite reductase subunit B n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBT1_9BACT rbh
Tax=RBG_16_Anaeromyxobacter_69_14_curated
04302015_37_scaffold_124_19

Not on your lists

24563..24799
DNA (237bp) protein (79aa)
DsrD n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBT0_9BACT
Marine sediment metagenome DNA, contig: S01H1_S27657 {ECO:0000313|EMBL:GAG41613.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
DsrD? Jill Banfield (11/1/16)
04302015_37_scaffold_124_20

Not on your lists

24868..26586
DNA (1719bp) protein (573aa)
Iron-sulfur-binding protein, glutamate synthase subunit (DsrL/GltD) n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBS8_9BACT rbh
Iron-sulfur-binding protein, glutamate synthase subunit (DsrL/GltD) {ECO:0000313|EMBL:CAJ31128.1}; TaxID=153939 species="Bacteria; environmental samples.;" source="uncultured sulfate-reducing bacterium.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
04302015_37_scaffold_124_21
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26591..27907
DNA (1317bp) protein (439aa)
Cobyrinic acid A,C-diamide synthase n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBS7_9BACT rbh
cobyrinic acid a,c-diamide synthase rbh
Tax=RBG_16_Anaeromyxobacter_69_14_curated
04302015_37_scaffold_124_22
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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27904..28365
DNA (462bp) protein (154aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DNY1_9FIRM
PBS lyase HEAT domain-containing protein
PBS lyase HEAT domain protein repeat-containing protein {ECO:0000313|EMBL:AEF93326.1}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
04302015_37_scaffold_124_23
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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28362..28553
DNA (192bp) protein (64aa)
Tax=GWA2_Gallionellales_54_124_curated
Displaying 23 items

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