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04302015_37_scaffold_199

Search features with annotation key words

Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_199_1
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

1..1524
DNA (1524bp) protein (508aa)
sigma 38, RpoS; K03086 RNA polymerase primary sigma factor id=12556622 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpoD; RNA polymerase sigma factor rpoD
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_trna_1
unknown

Not on your lists

1711..1783
DNA (73bp)
transferRNA Met
04302015_37_scaffold_199_2
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

1859..2587
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI00035FC973
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

2584..3018
DNA (435bp) protein (145aa)
ribonuclease H
Ribonuclease H id=4757655 bin=GWA2_OP3_52_12 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_4
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

3038..3757
DNA (720bp) protein (240aa)
Alanine racemase domain protein n=1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CWA4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDA54991.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein
04302015_37_scaffold_199_5
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

3818..4342
DNA (525bp) protein (175aa)
Cell division protein DivIVA n=1 Tax=Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01) RepID=K0J4M8_AMPXN
Uncharacterized protein {ECO:0000313|EMBL:KDA54990.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
divIVA; cell division protein DivIVA
04302015_37_scaffold_199_6
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

4389..5642
DNA (1254bp) protein (418aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Imidazolonepropionase n=1 Tax=Paenibacillus mucilaginosus 3016 RepID=H6NEX6_9BACL rbh
protein HutI rbh
04302015_37_scaffold_199_7
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(5639..7849)
DNA (2211bp) protein (737aa)
ATP-dependent DNA helicase PcrA n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LRT9_ACIC1 rbh
UvrD/REP helicase rbh
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_8
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7906..10191)
DNA (2286bp) protein (762aa)
Putative oligosaccharyl transferase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z273_METPS
putative oligosaccharyl transferase
Tax=RBG_13_Deltaproteobacteria_65_10_curated
04302015_37_scaffold_199_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(10574..12409)
DNA (1836bp) protein (612aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDU4_CHLTF
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_10
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(12466..13422)
DNA (957bp) protein (319aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.3.1.157)
Bifunctional protein GlmU n=1 Tax=Mycobacterium intracellulare MOTT-02 RepID=H8J878_MYCIT
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(13487..14071)
DNA (585bp) protein (195aa)
Putative GTPase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI80_CHLTF
putative GTPase
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_12
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(14068..14562)
DNA (495bp) protein (165aa)
Roadblock/LC7 family protein id=3315103 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
dynein regulation protein LC7
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(14613..15212)
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPN7_9BACT
recR; recombination protein RecR
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_14
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(15212..15511)
DNA (300bp) protein (100aa)
Nucleoid-associated protein SIAM614_03091 n=3 Tax=Labrenzia RepID=A0NUM7_9RHOB
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(15508..17058)
DNA (1551bp) protein (517aa)
DNA polymerase III subunits gamma/tau (EC:2.7.7.7) rbh
DNA polymerase III, tau subunit n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IFP2_ANADE rbh
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_trna_3
unknown

Not on your lists

comp(17333..17419)
DNA (87bp)
transferRNA Ser
04302015_37_scaffold_199_trna_2
unknown

Not on your lists

comp(17488..17576)
DNA (89bp)
transferRNA Ser
04302015_37_scaffold_199_16
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(17594..18085)
DNA (492bp) protein (164aa)
tRNA-specific adenosine deaminase n=1 Tax=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) RepID=A9WLN6_RENSM
tRNA-specific adenosine deaminase
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_17
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(18082..19557)
DNA (1476bp) protein (492aa)
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(19641..20102)
DNA (462bp) protein (154aa)
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_19
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(20200..22302)
DNA (2103bp) protein (701aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9T603_9CYAN rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein rbh
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_20
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(22307..23815)
DNA (1509bp) protein (503aa)
PAS sensor protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C133_NITHN
PAS sensor protein
Tax=RBG_13_Acidobacteria_68_16_curated
04302015_37_scaffold_199_21
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(23941..25194)
DNA (1254bp) protein (418aa)
Succinyl-diaminopimelate desuccinylase id=2414975 bin=GWA2_Elusimicrobia_69_24 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia rbh
diaminopimelate aminotransferase rbh
Tax=GWA2_Elusimicrobia_69_24_curated
04302015_37_scaffold_199_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25320..25943)
DNA (624bp) protein (208aa)
Phosphoesterase n=1 Tax=Niabella soli DSM 19437 RepID=H1NRB6_9SPHI
acid phosphatase
Acid phosphatase {ECO:0000313|EMBL:AHF15991.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
04302015_37_scaffold_199_23
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(26217..27815)
DNA (1599bp) protein (533aa)
5'-Nucleotidase-like protein n=1 Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1J2V0_DEIGD rbh
5'-nucleotidase-like rbh
5'-Nucleotidase-like protein {ECO:0000313|EMBL:ABF44184.1}; Flags: Precursor;; TaxID=319795 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geothermalis (strain DSM 11300).;"
04302015_37_scaffold_199_24
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28117..28962)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000369A5AB
Peptidase S41 {ECO:0000313|EMBL:EGY01493.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
Displaying 27 items

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