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04302015_37_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 49 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_85_1
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..277
DNA (276bp) protein (92aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Threonine--tRNA ligase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1P7_ACIMA
04302015_37_scaffold_85_2
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

409..807
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=Q2T4G1_BURTA
snoaL-like domain protein
Uncharacterized protein {ECO:0000313|EMBL:ABC34054.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
04302015_37_scaffold_85_3
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(906..1121)
DNA (216bp) protein (72aa)
HpcH/HpaI aldolase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTX8_POLNA
HpcH/HpaI aldolase
Tax=BJP_IG2103_Dechloromonas_60_92
04302015_37_scaffold_85_4
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1140..1610)
DNA (471bp) protein (157aa)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000255|HAMAP-Rule:MF_00116}; Short=dUTPase {ECO:0000255|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000255|HAMAP-Rule:MF_00116};; dUTP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_00116}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=3 Tax=Acidiphilium RepID=DUT_ACICJ
04302015_37_scaffold_85_5
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1607..2815)
DNA (1209bp) protein (403aa)
Phosphopantothenate-cysteine ligase {ECO:0000313|EMBL:ABQ30929.1}; EC=6.3.2.5 {ECO:0000313|EMBL:ABQ30929.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Phosphopantothenate-cysteine ligase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZ97_ACICJ rbh
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase rbh
04302015_37_scaffold_85_6
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2812..3567)
DNA (756bp) protein (252aa)
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC:2.1.1.-)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=2 Tax=Acidiphilium RepID=UBIE_ACICJ
04302015_37_scaffold_85_7
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3593..4420
DNA (828bp) protein (276aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=FPG_ACICJ
04302015_37_scaffold_85_8
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4396..5028)
DNA (633bp) protein (211aa)
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000255|HAMAP-Rule:MF_00135}; Short=PRAI {ECO:0000255|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000255|HAMAP-Rule:MF_00135};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=TRPF_ACICJ
04302015_37_scaffold_85_9
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5025..5726)
DNA (702bp) protein (234aa)
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Orotidine 5'-phosphate decarboxylase n=2 Tax=Acidiphilium RepID=F0IZA4_ACIMA
04302015_37_scaffold_85_10
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5735..6034)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZA3_ACIMA
Uncharacterized protein {ECO:0000313|EMBL:KDM66543.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
hypothetical protein
04302015_37_scaffold_85_11
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6046..6381)
DNA (336bp) protein (112aa)
Integration host factor subunit beta n=3 Tax=Acidiphilium RepID=A5FZ92_ACICJ
ihfB; integration host factor beta subunit
Integration host factor subunit beta {ECO:0000256|RuleBase:RU003941, ECO:0000256|SAAS:SAAS00062449}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_85_12
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6505..7149)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZA1_ACIMA
hypothetical protein
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_85_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7142..7744)
DNA (603bp) protein (201aa)
Molybdenum cofactor guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Short=MoCo guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000255|HAMAP-Rule:MF_00316};; GTP:molybdopterin guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000255|HAMAP-Rule:MF_00316}; Short=MGD synthase {ECO:0000255|HAMAP-Rule:MF_00316};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Molybdenum cofactor guanylyltransferase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=MOBA_ACICJ
molybdopterin-guanine dinucleotide biosynthesis protein A
04302015_37_scaffold_85_trna_2
unknown

Not on your lists

comp(7779..7851)
DNA (73bp)
transferRNA His
04302015_37_scaffold_85_14
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7865..9070)
DNA (1206bp) protein (402aa)
putative aminotransferase (EC:2.6.1.-)
Putative uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7S4V4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGO95832.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_37_scaffold_85_15
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9385..9723
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=3 Tax=Acidiphilium RepID=A5G315_ACICJ
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:KDM68503.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_85_16
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9891..11321
DNA (1431bp) protein (477aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Glutamine synthetase n=3 Tax=Acidiphilium RepID=A5G314_ACICJ
glutamine synthetase, type I
04302015_37_scaffold_85_17
unknown

Not on your lists

comp(11581..11709)
DNA (129bp) protein (43aa)

This feature has no annotations

04302015_37_scaffold_85_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11901..12143
DNA (243bp) protein (81aa)
Glutathione S-transferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z297_9RHIZ
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44635.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
glutathione S-transferase domain-containing protein
04302015_37_scaffold_85_19
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12220..13002)
DNA (783bp) protein (261aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0J5M1_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ82415.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_85_20
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13191..13496)
DNA (306bp) protein (102aa)
Cytochrome c class I n=1 Tax=Acidiphilium sp. PM RepID=F7SB49_9PROT
Cytochrome c class I {ECO:0000313|EMBL:EGO93620.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein
04302015_37_scaffold_85_21
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13652..15226)
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002D7A651 rbh
Oleate hydratase {ECO:0000313|EMBL:AKH18871.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
myosin-crossreactive antigen rbh
04302015_37_scaffold_85_22
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15364..15651
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWJ7_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97384.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
04302015_37_scaffold_85_23
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15742..16392
DNA (651bp) protein (217aa)
Isochorismate family protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V9B9_9RHIZ
Isochorismate family protein {ECO:0000313|EMBL:ENN87577.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
isochorismate family protein
04302015_37_scaffold_85_24
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16456..17193
DNA (738bp) protein (246aa)
phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Phosphoribosylformylglycinamidine synthase subunit I n=3 Tax=Acidiphilium RepID=A5G1X3_ACICJ
04302015_37_scaffold_85_25
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17195..19402
DNA (2208bp) protein (736aa)
purL; phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4Z1_ACIMA
04302015_37_scaffold_85_26
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19438..19671
DNA (234bp) protein (78aa)
BolA-like protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHR4_9PROT
BolA-like protein {ECO:0000313|EMBL:EFH13157.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
BolA family protein
04302015_37_scaffold_85_27
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19714..20049
DNA (336bp) protein (112aa)
Glutaredoxin n=3 Tax=Acidiphilium RepID=A5G1X6_ACICJ
glutaredoxin-like protein
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_85_28
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20135..21304
DNA (1170bp) protein (390aa)
Uncharacterized protein n=4 Tax=Acidiphilium RepID=A5G1X7_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ82341.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_85_29
unknown

Not on your lists

comp(21323..21799)
DNA (477bp) protein (159aa)

This feature has no annotations

Displaying items 1-30 of 49 in total

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