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04302015_37_scaffold_46

Search features with annotation key words

Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_46_1
unknown

Not on your lists

comp(483..671)
DNA (189bp) protein (63aa)

This feature has no annotations

04302015_37_scaffold_46_2
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(994..2166)
DNA (1173bp) protein (391aa)
Phage integrase family protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y407_9PROT
Shufflon-specific DNA recombinase {ECO:0000313|EMBL:GAJ28299.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
integrase
04302015_37_scaffold_46_trna_4
unknown

Not on your lists

comp(2368..2454)
DNA (87bp)
transferRNA Ser
04302015_37_scaffold_46_3
unknown

Not on your lists

2553..2744
DNA (192bp) protein (64aa)

This feature has no annotations

04302015_37_scaffold_46_4
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2735..3289
DNA (555bp) protein (185aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Deoxycytidine triphosphate deaminase n=3 Tax=Acidiphilium RepID=DCD_ACICJ
04302015_37_scaffold_46_5
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3296..4552
DNA (1257bp) protein (419aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=3 Tax=Acidiphilium RepID=MURA_ACICJ
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
04302015_37_scaffold_46_6
unknown

Not on your lists

4577..4738
DNA (162bp) protein (54aa)

This feature has no annotations

04302015_37_scaffold_46_7
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4830..5360)
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=3 Tax=Acidiphilium RepID=A5FXB0_ACICJ
nusG; transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_37_scaffold_46_8
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5365..5613)
DNA (249bp) protein (83aa)
Protein translocase subunit SecE n=3 Tax=Acidiphilium RepID=A5FXB1_ACICJ
putative protein translocase subunit SecE/Sec61
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_46_trna_3
unknown

Not on your lists

comp(5589..5662)
DNA (74bp)
transferRNA Trp
04302015_37_scaffold_46_trna_2
unknown

Not on your lists

comp(5763..5833)
DNA (71bp)
transferRNA Gly
04302015_37_scaffold_46_9
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5877..6938)
DNA (1062bp) protein (354aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ERL6_METSB rbh
NAD-dependent epimerase/dehydratase rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACK51068.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
04302015_37_scaffold_46_10
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7055..8686
DNA (1632bp) protein (544aa)
aidB; acyl-CoA dehydrogenase (EC:1.3.99.-) rbh
Acyl-CoA dehydrogenase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J5F7_ACIMA rbh
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABQ30248.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_46_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8699..9763
DNA (1065bp) protein (355aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Acidiphilium sp. PM RepID=F7S904_9PROT
04302015_37_scaffold_46_12
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9928..10968
DNA (1041bp) protein (347aa)
Protein RecA n=3 Tax=Acidiphilium RepID=RECA_ACICJ
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_37_scaffold_46_13
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11092..13728
DNA (2637bp) protein (879aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7) rbh
Alanine--tRNA ligase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J5F1_ACIMA rbh
04302015_37_scaffold_46_14
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13742..14704)
DNA (963bp) protein (321aa)
Putative glycosyltransferase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IX85_ACIMA rbh
putative glycosyltransferase rbh
Putative glycosyltransferase {ECO:0000313|EMBL:KDM67495.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_46_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14701..17388)
DNA (2688bp) protein (896aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMD3_9GAMM rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:AEM49295.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
04302015_37_scaffold_46_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17393..20104)
DNA (2712bp) protein (904aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMD3_9GAMM
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEM49295.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
04302015_37_scaffold_46_17
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20224..21672
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J3E7_ACIMA
hypothetical protein
Membrane protein-like protein {ECO:0000313|EMBL:KDM65990.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_46_18
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21805..23739
DNA (1935bp) protein (645aa)
Putative peptidase S9 n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IX43_ACIMA rbh
putative peptidase S9 rbh
Putative peptidase S9 {ECO:0000313|EMBL:KDM67416.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_46_19
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23736..24380
DNA (645bp) protein (215aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5FWK3_ACICJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ29985.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_46_20
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24600..26444)
DNA (1845bp) protein (615aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037DAB21 rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:KIG01897.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
putative TRAP-type C4-dicarboxylate transport system
04302015_37_scaffold_46_21
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26466..27485)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035E3CEA rbh
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:GAN81610.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
TRAP dicarboxylate transporter subunit DctP
04302015_37_scaffold_46_22
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27767..27979)
DNA (213bp) protein (71aa)
Collagen triple helix repeat protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXP6_ACICJ
hypothetical protein
Triple helix repeat-containing collagen {ECO:0000313|EMBL:EGO96073.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_37_scaffold_46_23
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27976..28239)
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:BAJ80078.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_46_24
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28295..29281)
DNA (987bp) protein (329aa)
Collagen triple helix repeat protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXP6_ACICJ
triple helix repeat-containing collagen
Collagen triple helix repeat protein {ECO:0000313|EMBL:ABQ30378.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_46_25
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29536..30468)
DNA (933bp) protein (311aa)
Putative transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S756_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EHP41581.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
Transcriptional regulator, LysR family
04302015_37_scaffold_46_26
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30514..31095)
DNA (582bp) protein (194aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Guanylate kinase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FYH4_ACICJ
04302015_37_scaffold_46_27
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31102..32031)
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7S337_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EGO96478.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein rbh
Displaying items 1-30 of 46 in total

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