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04302015_37_scaffold_97

Search features with annotation key words

Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_97_1
unknown

Not on your lists

comp(84..689)
DNA (606bp) protein (202aa)

This feature has no annotations

04302015_37_scaffold_97_2
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(835..1500)
DNA (666bp) protein (222aa)
Hydrolase of the alpha/beta superfamily-like protein n=3 Tax=Acidiphilium RepID=A5FZD9_ACICJ rbh
alpha/beta fold family hydrolase-like protein rbh
Hydrolase of the alpha/beta superfamily-like protein {ECO:0000313|EMBL:KDM66688.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_97_3
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1944..2663
DNA (720bp) protein (240aa)
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Serine acetyltransferase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZF1_ACIMA
04302015_37_scaffold_97_4
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2641..3801
DNA (1161bp) protein (387aa)
Aminotransferase, class V n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZD7_ACICJ
class V aminotransferase
Aminotransferase, class V {ECO:0000313|EMBL:ABQ30969.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_97_5
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3811..4143
DNA (333bp) protein (111aa)
Ferredoxin n=3 Tax=Acidiphilium RepID=A5FZD6_ACICJ
ferredoxin
2Fe-2S ferredoxin FdxB {ECO:0000313|EMBL:KDM66685.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_97_6
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4152..5189
DNA (1038bp) protein (346aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA {ECO:0000255|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000255|HAMAP-Rule:MF_00144};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=MNMA_ACICJ
04302015_37_scaffold_97_7
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5424..5747
DNA (324bp) protein (108aa)
RNA-binding protein Hfq n=1 Tax=Acidiphilium sp. PM RepID=F7S7U8_9PROT
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
RNA chaperone Hfq
04302015_37_scaffold_97_8
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5754..7064
DNA (1311bp) protein (437aa)
GTPase HflX n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZE3_ACIMA rbh
hflX; GTP-binding protein HflX rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_97_9
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7061..7906
DNA (846bp) protein (282aa)
putative inositol monophosphatase (EC:3.1.3.25)
Inositol monophosphatase n=3 Tax=Acidiphilium RepID=A5FZD1_ACICJ
Inositol monophosphatase {ECO:0000313|EMBL:ABQ30963.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_97_10
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7886..8707)
DNA (822bp) protein (274aa)
mazG; nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.19)
MazG family protein n=3 Tax=Acidiphilium RepID=A5FZD0_ACICJ
MazG family protein {ECO:0000313|EMBL:ABQ30962.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_97_11
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8807..9772
DNA (966bp) protein (322aa)
Putative oxidoreductase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZE0_ACIMA
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAJ81150.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_97_12
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10047..11114
DNA (1068bp) protein (356aa)
fbp; fructose-1,6-bisphosphatase class I (EC:3.1.3.11) rbh
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IX29_ACIMA rbh
04302015_37_scaffold_97_13
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11111..11989
DNA (879bp) protein (293aa)
phosphoribulokinase (EC:2.7.1.19) rbh
Phosphoribulokinase {ECO:0000313|EMBL:BAJ80438.1}; EC=2.7.1.19 {ECO:0000313|EMBL:BAJ80438.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Phosphoribulokinase n=3 Tax=Acidiphilium RepID=A5FWQ9_ACICJ rbh
04302015_37_scaffold_97_14
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12116..13195
DNA (1080bp) protein (360aa)
fructose-bisphosphate aldolase (EC:4.1.2.13) rbh
Fructose-bisphosphate aldolase class II {ECO:0000313|EMBL:BAJ80437.1}; EC=4.1.2.13 {ECO:0000313|EMBL:BAJ80437.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Fructose-bisphosphate aldolase n=2 Tax=Acidiphilium RepID=A5FWR0_ACICJ rbh
04302015_37_scaffold_97_15
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13224..14702
DNA (1479bp) protein (493aa)
Ribulose bisphosphate carboxylase large chain {ECO:0000256|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit {ECO:0000256|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000256|HAMAP-Rule:MF_01338};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39) rbh
Ribulose bisphosphate carboxylase large chain n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IX26_ACIMA rbh
04302015_37_scaffold_97_16
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14714..15136
DNA (423bp) protein (141aa)
cbbS; ribulose bisphosphate carboxylase small chain (EC:4.1.1.39)
Ribulose 1,5-bisphosphate carboxylase small subunit {ECO:0000313|EMBL:ABQ30044.1}; EC=4.1.1.39 {ECO:0000313|EMBL:ABQ30044.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Ribulose 1,5-bisphosphate carboxylase small subunit n=5 Tax=cellular organisms RepID=A5FWR2_ACICJ
04302015_37_scaffold_97_17
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15145..16074
DNA (930bp) protein (310aa)
AAA ATPase, central domain protein n=2 Tax=Acidiphilium RepID=A5FWR3_ACICJ rbh
ATPase central domain-containing protein rbh
Protein CbbX {ECO:0000313|EMBL:KDM67397.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_97_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16067..16750
DNA (684bp) protein (228aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1) rbh
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Ribulose-phosphate 3-epimerase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FWR4_ACICJ rbh
04302015_37_scaffold_97_19
unknown

Not on your lists

16829..16933
DNA (105bp) protein (35aa)

This feature has no annotations

04302015_37_scaffold_97_20
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17417..18700
DNA (1284bp) protein (428aa)
phenylacetate-CoA ligase (EC:6.2.1.30) rbh
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
phenylacetate-CoA ligase n=1 Tax=Sphingomonas wittichii RepID=UPI00030203E7 rbh
04302015_37_scaffold_97_21
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18734..19324)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HYJ9_9SPHN
Transcriptional regulator of TetR family {ECO:0000313|EMBL:GAM99044.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
TetR family transcriptional regulator
04302015_37_scaffold_97_22
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19679..20662
DNA (984bp) protein (328aa)
paaA; 1,2-phenylacetyl-CoA epoxidase, subunit A (EC:1.14.13.149)
Phenylacetate-CoA oxygenase subunit PaaA n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J578_9SPHN rbh
Phenylacetate-CoA oxygenase subunit PaaG {ECO:0000313|EMBL:GAO38721.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
04302015_37_scaffold_97_23
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20664..20948
DNA (285bp) protein (95aa)
Phenylacetate-CoA oxygenase subunit PaaB n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5A9E0_BURGB
Phenylacetate-CoA oxygenase PaaH subunit {ECO:0000313|EMBL:GAM99049.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
paaB1; phenylacetate-CoA oxygenase, PaaB subunit
04302015_37_scaffold_97_24
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20948..21649
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035D7470
Phenylacetate-CoA oxygenase PaaI subunit {ECO:0000313|EMBL:GAM99048.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
paaC; 1,2-phenylacetyl-CoA epoxidase, subunit C
04302015_37_scaffold_97_25
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21646..22140
DNA (495bp) protein (165aa)
phenylacetate-CoA oxygenase subunit PaaJ n=1 Tax=Sphingomonas wittichii RepID=UPI0002F20C68
phenylacetate-CoA oxygenase subunit PaaJ
Phenylacetate-CoA oxygenase, PaaJ subunit {ECO:0000313|EMBL:ABQ67123.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
04302015_37_scaffold_97_26
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22131..23234
DNA (1104bp) protein (368aa)
Phenylacetate-CoA oxygenase/reductase, PaaK subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4A8_SPHWW rbh
phenylacetate-CoA oxygenase/reductase subunit PaaK rbh
Phenylacetate-CoA oxygenase/reductase, PaaK subunit {ECO:0000313|EMBL:ABQ67124.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
04302015_37_scaffold_97_27
unknown

Not on your lists

comp(23689..24297)
DNA (609bp) protein (203aa)

This feature has no annotations

Displaying 27 items

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