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04302015_37_scaffold_114

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_114_1
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..362)
DNA (360bp) protein (120aa)
two-component sensor histidine kinase (EC:2.7.13.3)
Signal transduction histidine kinase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FWU0_ACICJ
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EGO95382.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_37_scaffold_114_2
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(365..1075)
DNA (711bp) protein (237aa)
Two component transcriptional regulator, winged helix family n=4 Tax=Acidiphilium RepID=A5FWT9_ACICJ
two component transcriptional regulator
Two component transcriptional regulator {ECO:0000313|EMBL:BAJ80408.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_114_3
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1075..1620)
DNA (546bp) protein (182aa)
MarR family transcriptional regulator n=3 Tax=Acidiphilium RepID=F0IWZ9_ACIMA
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABQ30070.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_114_4
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1772..2671
DNA (900bp) protein (300aa)
branched-chain amino acid aminotransferase (EC:2.6.1.-)
Branched chain amino acid aminotransferase apoenzyme {ECO:0000313|EMBL:ABQ30069.1}; EC=2.6.1.42 {ECO:0000313|EMBL:ABQ30069.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Branched chain amino acid aminotransferase apoenzyme n=3 Tax=Acidiphilium RepID=A5FWT7_ACICJ
04302015_37_scaffold_114_5
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2930..3322
DNA (393bp) protein (131aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5FWT6_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ80411.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_114_6
Acetobacter malorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3559..4584
DNA (1026bp) protein (342aa)
Outer membrane autotransporter barrel domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHE5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFL91293.1}; TaxID=178901 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter malorum.;"
outer membrane autotransporter barrel domain-containing protein
04302015_37_scaffold_114_7
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4607..6874
DNA (2268bp) protein (756aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003799E17 rbh
Autotransporter protein {ECO:0000313|EMBL:AIF48277.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
autotransporter protein
04302015_37_scaffold_114_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7171..10209
DNA (3039bp) protein (1013aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
CRISPR-associated endonuclease, Csn1 family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13CC2_RHOPS rbh
CRISPR-associated Cas5e family protein rbh
04302015_37_scaffold_114_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10185..11129
DNA (945bp) protein (315aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20XX5_RHOPB rbh
CRISPR-associated Cas1 family protein rbh
04302015_37_scaffold_114_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11160..11489
DNA (330bp) protein (110aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20XX6_RHOPB
hypothetical protein
04302015_37_scaffold_114_11
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12812..13513)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ARh3 RepID=UPI0003620E27
Uncharacterized protein {ECO:0000313|EMBL:KEO56149.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
04302015_37_scaffold_114_12
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13627..14280
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J0Y8_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ81674.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_114_13
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14334..15206)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IXS2_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDM65277.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_114_14
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15214..15822)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J3G7_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ29610.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_114_15
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15819..16511)
DNA (693bp) protein (231aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Leucyl/phenylalanyl-tRNA--protein transferase n=3 Tax=Acidiphilium RepID=A5FWC1_ACICJ
04302015_37_scaffold_114_16
unknown

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comp(16533..17555)
DNA (1023bp) protein (341aa)

This feature has no annotations

04302015_37_scaffold_114_17
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17820..19163
DNA (1344bp) protein (448aa)
rkpK; UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase RkpK {ECO:0000313|EMBL:KDM65172.1}; EC=1.1.1.22 {ECO:0000313|EMBL:KDM65172.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
UDP-glucose 6-dehydrogenase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IY82_ACIMA
04302015_37_scaffold_114_18
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19172..20956
DNA (1785bp) protein (595aa)
putative methyltransferase (EC:2.1.1.-)
Putative methyltransferase {ECO:0000313|EMBL:BAJ80743.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAJ80743.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Putative methyltransferase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IY83_ACIMA
04302015_37_scaffold_114_19
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21138..25115
DNA (3978bp) protein (1326aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IY84_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ80744.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_114_20
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25115..26158
DNA (1044bp) protein (348aa)
Lipopolysaccharide biosynthesis protein-like protein n=3 Tax=Acidiphilium RepID=A5FY80_ACICJ
Putative lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:KDM65463.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
putative lipopolysaccharide biosynthesis protein
Displaying 20 items

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