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04302015_37_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 155 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_2_1
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..144
DNA (144bp) protein (48aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WWM6_METML
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ACT48325.1}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
04302015_37_scaffold_2_2

Not on your lists

2105..2431
DNA (327bp) protein (109aa)
Putative signal peptide protein n=1 Tax=mine drainage metagenome RepID=E6QS84_9ZZZZ
Putative signal peptide protein {ECO:0000313|EMBL:CBI10106.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative signal peptide protein
04302015_37_scaffold_2_3

Not on your lists

2443..3345
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QS83_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10105.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein of unknown function DUF692
04302015_37_scaffold_2_4
unknown

Not on your lists

3338..4096
DNA (759bp) protein (253aa)

This feature has no annotations

04302015_37_scaffold_2_5

Not on your lists

4099..4551
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1ANQ6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD59017.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DoxX protein
04302015_37_scaffold_2_6
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5005..6348)
DNA (1344bp) protein (448aa)
Transmembrane protein n=1 Tax=uncultured bacterium RepID=K2BTS3_9BACT rbh
Kef-type K+ transport system membrane protein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
04302015_37_scaffold_2_7
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6531..9179)
DNA (2649bp) protein (883aa)
Molybdopterin oxidoreductase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CU67_SIDLE rbh
Molybdopterin oxidoreductase {ECO:0000313|EMBL:ADE10402.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
molybdopterin oxidoreductase rbh
04302015_37_scaffold_2_8
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9182..10003)
DNA (822bp) protein (274aa)
Formate/nitrite transporter family protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T1X6_9RHIZ
Formate/nitrite family of transporter
Tax=RBG_16_Betaproteobacteria_56_24_curated
04302015_37_scaffold_2_9
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10064..10390)
DNA (327bp) protein (109aa)
Nitrite reductase (NAD(P)H), small subunit n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CU66_SIDLE
nitrite reductase (NAD(P)H), small subunit
Tax=RBG_16_Betaproteobacteria_56_24_curated
04302015_37_scaffold_2_10
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10402..12876)
DNA (2475bp) protein (825aa)
Nitrite reductase (NAD(P)H), large subunit n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CU65_SIDLE rbh
Nitrite reductase (NAD(P)H), large subunit {ECO:0000313|EMBL:ADE10400.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
nitrite reductase (NAD(P)H), large subunit rbh
04302015_37_scaffold_2_11

Not on your lists

13384..14595
DNA (1212bp) protein (404aa)
Nitrate transporter n=1 Tax=mine drainage metagenome RepID=E6QSY0_9ZZZZ rbh
Nitrate transporter {ECO:0000313|EMBL:CBI10352.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
major facilitator superfamily protein rbh
04302015_37_scaffold_2_12

Not on your lists

14618..16318
DNA (1701bp) protein (567aa)
Putative serine/threonine protein kinase n=1 Tax=mine drainage metagenome RepID=E6QSX9_9ZZZZ rbh
Putative serine/threonine protein kinase {ECO:0000313|EMBL:CBI10351.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative serine/threonine protein kinase rbh
04302015_37_scaffold_2_13
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16334..17620)
DNA (1287bp) protein (429aa)
amidase, hydantoinase/carbamoylase (EC:3.5.1.87) rbh
Amidase, hydantoinase/carbamoylase n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W4Z1_9BURK rbh
Amidase, hydantoinase/carbamoylase {ECO:0000313|EMBL:EGF30074.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
04302015_37_scaffold_2_14
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17641..18348)
DNA (708bp) protein (236aa)
LivF protein {ECO:0000313|EMBL:EIZ04918.1}; EC=3.6.3.22 {ECO:0000313|EMBL:EIZ04918.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
LivF protein n=1 Tax=Ralstonia sp. PBA RepID=I9BYA2_9RALS rbh
Branched-chain amino acid transport ATP-binding protein LivF
04302015_37_scaffold_2_15
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18345..19127)
DNA (783bp) protein (261aa)
LivG protein {ECO:0000313|EMBL:EIZ04917.1}; EC=3.6.3.22 {ECO:0000313|EMBL:EIZ04917.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
LivG protein n=1 Tax=Ralstonia sp. PBA RepID=I9W8L2_9RALS rbh
livM; high-affinity branched-chain amino acid ABC transporter permease rbh
04302015_37_scaffold_2_16
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19143..20303)
DNA (1161bp) protein (387aa)
ABC-type transporter, permease component: HAAT family n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W4Z5_9BURK rbh
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) {ECO:0000313|EMBL:CDS55387.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
livM3; ABC transporter permease rbh
04302015_37_scaffold_2_17
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20290..21186)
DNA (897bp) protein (299aa)
Branched chain amino acid ABC transporter permease n=1 Tax=Ralstonia sp. PBA RepID=I9KX66_9RALS rbh
High-affinity branched-chain amino acid transport system permease protein LivH
Branched chain amino acid ABC transporter permease {ECO:0000313|EMBL:EIZ04915.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
04302015_37_scaffold_2_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21269..22426)
DNA (1158bp) protein (386aa)
ABC-type branched-chain amino acid transport systems, periplasmic component n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SVP9_JANMA rbh
livK2; branched-chain amino acid ABC transporter periplasmic protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
04302015_37_scaffold_2_19
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22710..23552
DNA (843bp) protein (281aa)
Fatty acid hydroxylase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2E0_NITHN
fatty acid hydroxylase
Fatty acid hydroxylase {ECO:0000313|EMBL:ADE14799.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
04302015_37_scaffold_2_20
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23804..24670)
DNA (867bp) protein (289aa)
S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.28 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SHD8_GALCS rbh
methylthioadenosine phosphorylase rbh
04302015_37_scaffold_2_21
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24875..25861
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI000379BD4C
radical SAM domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
04302015_37_scaffold_2_22
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25861..28014
DNA (2154bp) protein (718aa)
dihydrolipoyl dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) RepID=F2JXQ8_MARM1
FAD-dependent NAD(P)-disulfide oxidoreductase {ECO:0000313|EMBL:KGM06286.1}; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thiooxydans.;"
04302015_37_scaffold_2_23
Alteromonadales bacterium TW-7, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28016..28819
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Psychrobacter sp. PAMC 21119 RepID=UPI000287AD8C
Uncharacterized protein {ECO:0000313|EMBL:EAW28122.1}; TaxID=156578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales.;" source="Alteromonadales bacterium TW-7.;"
hypothetical protein
04302015_37_scaffold_2_24
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28823..29500
DNA (678bp) protein (226aa)
Glycosyl transferase, family 2 n=2 Tax=Nitrosococcus oceani RepID=Q3JDI9_NITOC
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:KFI20468.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
04302015_37_scaffold_2_25
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29497..30126
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XZ8_RHOFD
hypothetical protein
Tax=CG_Gallio_01
04302015_37_scaffold_2_26
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30119..30838
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Marinobacterium stanieri RepID=UPI00025577B1
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_60_92
04302015_37_scaffold_2_27
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30912..31946
DNA (1035bp) protein (345aa)
Arsenite methyltransferase {ECO:0000313|EMBL:EDY86538.1}; EC=2.1.1.137 {ECO:0000313|EMBL:EDY86538.1};; TaxID=391615 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HTCC5015.;"
Arsenite methyltransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV17_9GAMM
type 11 methyltransferase
04302015_37_scaffold_2_28
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32303..33403
DNA (1101bp) protein (367aa)
Phosphate transporter n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W3U3_9CYAN
phosphate transporter
Phosphate transporter {ECO:0000313|EMBL:BAP87685.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
04302015_37_scaffold_2_29
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33412..34377)
DNA (966bp) protein (322aa)
Transcriptional regulator, LysR family n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLV9_THISH
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACL71712.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
04302015_37_scaffold_2_30
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34431..36722
DNA (2292bp) protein (764aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Methylosarcina fibrata RepID=UPI0003660E58
Displaying items 1-30 of 155 in total

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