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04302015_37_scaffold_8

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Displaying items 1-30 of 126 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_8_trna_3
unknown

Not on your lists

comp(21..93)
DNA (73bp)
transferRNA Thr
04302015_37_scaffold_8_1
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118..540)
DNA (423bp) protein (141aa)
Stringent starvation protein B n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47HW2_DECAR
ClpXP protease specificity-enhancing factor
Stringent starvation protein B {ECO:0000313|EMBL:AAZ45569.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
04302015_37_scaffold_8_2
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(544..1143)
DNA (600bp) protein (200aa)
RegF n=1 Tax=Leeia oryzae RepID=UPI000360AD28 rbh
glutathione S-transferase-like protein rbh
Tax=CG_Beta_01
04302015_37_scaffold_8_3

Not on your lists

comp(1171..1920)
DNA (750bp) protein (250aa)
Ubiquinol-cytochrome c reductase, cytochrome c1 n=1 Tax=mine drainage metagenome RepID=T1BPM7_9ZZZZ
Ubiquinol-cytochrome c reductase, cytochrome c1 {ECO:0000313|EMBL:EQD71807.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
petC; Cytochrome c1
04302015_37_scaffold_8_4
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1920..3137)
DNA (1218bp) protein (406aa)
Cytochrome b n=2 Tax=Methylovorus RepID=C6X8R2_METSD
qcrB; cytochrome b/b6 domain-containing protein
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
04302015_37_scaffold_8_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3140..3742)
DNA (603bp) protein (201aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] id=12497865 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2)
Tax=GWE1_Thiobacillus_62_9_curated
04302015_37_scaffold_8_6
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3891..5057
DNA (1167bp) protein (389aa)
HtrA2 peptidase (EC:3.4.21.108) rbh
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Herbaspirillum sp. CF444 RepID=J2UBP4_9BURK rbh
Tax=CG_Beta_01
04302015_37_scaffold_8_7

Not on your lists

comp(5023..5781)
DNA (759bp) protein (253aa)
Sec-independent protein translocase, TatC subunit n=1 Tax=mine drainage metagenome RepID=T1ASV8_9ZZZZ rbh
Sec-independent protein translocase, TatC subunit {ECO:0000313|EMBL:EQD43834.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Sec-independent protein translocase subunit TatC
04302015_37_scaffold_8_8
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5778..6272)
DNA (495bp) protein (165aa)
Sec-independent protein translocase protein TatB n=2 Tax=Bordetella holmesii RepID=M5NJE4_9BORD
hypothetical protein
Tax=CG_Beta_01
04302015_37_scaffold_8_9

Not on your lists

comp(6300..6545)
DNA (246bp) protein (82aa)
Twin-arginine translocation protein TatA/E (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AGW7_9ZZZZ
Twin-arginine translocation protein TatA/E {ECO:0000313|EMBL:EQD40259.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
tatA; twin-arginine translocation protein TatA
04302015_37_scaffold_8_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6603..6929)
DNA (327bp) protein (109aa)
Probable HIT family protein id=1353644 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
HIT family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_37_scaffold_8_11
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6931..7263)
DNA (333bp) protein (111aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
Phosphoribosyl-ATP pyrophosphatase n=2 Tax=Thauera RepID=C4ZLR6_THASP
hisE; phosphoribosyl-ATP pyrophosphatase
04302015_37_scaffold_8_12
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7263..7658)
DNA (396bp) protein (132aa)
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase id=1926204 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RBG_16_Betaproteobacteria_56_24_curated
04302015_37_scaffold_8_13
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7655..8419)
DNA (765bp) protein (255aa)
hisF; imidazole glycerol phosphate synthase, catalytic subunit with HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5W543_BURSC rbh
04302015_37_scaffold_8_14
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8426..9184)
DNA (759bp) protein (253aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Methylophilus methylotrophus RepID=UPI0003605711
Tax=BJP_S1_SUB10_Methylophilales_55_32
04302015_37_scaffold_8_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9191..9826)
DNA (636bp) protein (212aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000255|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000255|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278}; Short=IGPS subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=HIS5_NITMU
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
04302015_37_scaffold_8_16
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9846..10433)
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNJ3_PUSST rbh
imidazoleglycerol-phosphate dehydratase rbh
Tax=BJP_S1_SUB10_Methylophilales_55_32
04302015_37_scaffold_8_17
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10437..11498)
DNA (1062bp) protein (354aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
hisC1; histidinol-phosphate aminotransferase (EC:2.6.1.9) rbh
Histidinol-phosphate aminotransferase n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YZV0_9GAMM rbh
04302015_37_scaffold_8_18
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11495..12790)
DNA (1296bp) protein (432aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23) rbh
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
histidinol dehydrogenase n=1 Tax=Aquaspirillum serpens RepID=UPI0003B34652 rbh
04302015_37_scaffold_8_19
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12787..13437)
DNA (651bp) protein (217aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
ATP phosphoribosyltransferase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GL11_NITSI
ATP phosphoribosyltransferase
04302015_37_scaffold_8_20
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13434..14699)
DNA (1266bp) protein (422aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7) rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AF13_9PROT rbh
Tax=CG_Beta_01
04302015_37_scaffold_8_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14709..14951)
DNA (243bp) protein (81aa)
BolA-like protein n=1 Tax=mine drainage metagenome RepID=T0Z7J6_9ZZZZ
BolA family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
04302015_37_scaffold_8_22

Not on your lists

comp(14964..15719)
DNA (756bp) protein (252aa)
ABC-2 type transporter, permease protein n=1 Tax=mine drainage metagenome RepID=T1AJ60_9ZZZZ rbh
ABC-2 type transporter, permease protein {ECO:0000313|EMBL:EQD40974.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_37_scaffold_8_23
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15716..16453)
DNA (738bp) protein (246aa)
ABC transporter related protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47AK6_DECAR rbh
ABC transporter related rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
04302015_37_scaffold_8_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16470..16745)
DNA (276bp) protein (92aa)
STAS domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHE5_9PROT
hypothetical protein
STAS domain {ECO:0000313|EMBL:CCU61907.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
04302015_37_scaffold_8_25

Not on your lists

comp(16742..17365)
DNA (624bp) protein (208aa)
Toluene tolerance n=1 Tax=mine drainage metagenome RepID=T1D648_9ZZZZ
Toluene tolerance {ECO:0000313|EMBL:EQD77760.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
toluene tolerance family protein
04302015_37_scaffold_8_26

Not on your lists

comp(17362..17844)
DNA (483bp) protein (161aa)
Mammalian cell entry related domain protein n=1 Tax=mine drainage metagenome RepID=T1D8L1_9ZZZZ
Mammalian cell entry related domain protein {ECO:0000313|EMBL:EQD77759.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ttg2C; putative signal peptide protein, toluene tolerance Ttg2C-like
04302015_37_scaffold_8_27

Not on your lists

comp(17845..18639)
DNA (795bp) protein (265aa)
Toluene tolerance ABC efflux transporter, permease n=1 Tax=mine drainage metagenome RepID=T1C9G9_9ZZZZ rbh
Toluene tolerance ABC efflux transporter, permease {ECO:0000313|EMBL:EQD77758.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_37_scaffold_8_28
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18648..19448)
DNA (801bp) protein (267aa)
Toluene tolerance ABC efflux transporter, ATP-binding protein n=1 Tax=mine drainage metagenome RepID=T1C6T4_9ZZZZ rbh
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
04302015_37_scaffold_8_29
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19515..21488)
DNA (1974bp) protein (658aa)
Potassium efflux system protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9N3_9PROT
Potassium transporter {ECO:0000313|EMBL:GAO35900.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
potassium efflux system protein
Displaying items 1-30 of 126 in total

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