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04302015_37_scaffold_19

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Displaying items 1-30 of 62 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_19_trna_4
unknown

Not on your lists

comp(159..232)
DNA (74bp)
transferRNA Pro
04302015_37_scaffold_19_1
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(352..771)
DNA (420bp) protein (140aa)
Transcriptional regulator, MerR family n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X7F1_OXAFO
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EEO29127.1}; TaxID=556269 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Oxalobacter.;" source="Oxalobacter formigenes OXCC13.;"
MerR family transcriptional regulator
04302015_37_scaffold_19_2
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(743..1054)
DNA (312bp) protein (104aa)
transcriptional regulator n=1 Tax=Aquaspirillum serpens RepID=UPI0003B5ED95
ihfA; integration host factor subunit alpha
Tax=RBG_16_Betaproteobacteria_64_18_curated
04302015_37_scaffold_19_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1065..3428)
DNA (2364bp) protein (788aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=SYFB_DECAR rbh
Tax=RBG_16_Betaproteobacteria_58_11_curated
04302015_37_scaffold_19_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3435..4454)
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B2P5_9PROT
phenylalanyl-tRNA synthetase subunit alpha
04302015_37_scaffold_19_5

Not on your lists


comp(4494..4853)
DNA (360bp) protein (120aa)
Ribosomal protein L20, bacterial-type n=1 Tax=mine drainage metagenome RepID=T0Y3L7_9ZZZZ
Ribosomal protein L20, bacterial-type {ECO:0000313|EMBL:EQD26517.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rplT; 50S ribosomal protein L20
04302015_37_scaffold_19_6

Not on your lists


comp(4866..5063)
DNA (198bp) protein (66aa)
Ribosomal protein L35 n=1 Tax=mine drainage metagenome RepID=T0Y0I6_9ZZZZ
Ribosomal protein L35 {ECO:0000313|EMBL:EQD26518.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L35
04302015_37_scaffold_19_7

Not on your lists

comp(5162..5761)
DNA (600bp) protein (200aa)
Translation initiation factor 3 n=1 Tax=mine drainage metagenome RepID=T0ZC17_9ZZZZ rbh
Translation initiation factor 3 {ECO:0000313|EMBL:EQD26519.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
translation initiation factor IF-3
04302015_37_scaffold_19_8
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5811..7784)
DNA (1974bp) protein (658aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Threonine--tRNA ligase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHX7_AZOSU rbh
threonyl-tRNA synthetase rbh
04302015_37_scaffold_19_trna_3
unknown

Not on your lists

comp(7748..7821)
DNA (74bp)
transferRNA Val
04302015_37_scaffold_19_9

Not on your lists

comp(7845..10097)
DNA (2253bp) protein (751aa)
ldcC; lysine decarboxylase (EC:4.1.1.18) rbh
Biodegradative arginine decarboxylase n=1 Tax=mine drainage metagenome RepID=T1C2L4_9ZZZZ rbh
Biodegradative arginine decarboxylase {ECO:0000313|EMBL:EQD75098.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_37_scaffold_19_10
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10135..11760)
DNA (1626bp) protein (542aa)
Acyl-CoA synthetase n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LDS6_BURGS
AMP-binding enzyme family protein
AMP-binding enzyme family protein {ECO:0000313|EMBL:KGC09738.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
04302015_37_scaffold_19_11
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11826..12851
DNA (1026bp) protein (342aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K5W9_AZOSB rbh
moaA; molybdenum cofactor biosynthesis protein A rbh
04302015_37_scaffold_19_12
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12900..13427
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI000366A0DF
molybdopterin-guanine dinucleotide biosynthesis protein A
Tax=BJP_S1_SUB10_Methylophilales_55_32
04302015_37_scaffold_19_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13420..14691
DNA (1272bp) protein (424aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLU5_METS6
moeA; molybdenum cofactor synthesis domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
04302015_37_scaffold_19_14
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14694..15437
DNA (744bp) protein (248aa)
ate1; arginyl-tRNA-protein transferase (EC:2.3.2.8)
Putative arginyl-tRNA--protein transferase n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=ATE_JANMA
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
04302015_37_scaffold_19_15
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15391..16440
DNA (1050bp) protein (350aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.98.1)
Dihydroorotate dehydrogenase (quinone) {ECO:0000255|HAMAP-Rule:MF_00225}; EC=1.3.5.2 {ECO:0000255|HAMAP-Rule:MF_00225};; DHOdehase {ECO:0000255|HAMAP-Rule:MF_00225}; Short=DHOD {ECO:0000255|HAMAP-Rule:MF_00225};; Short=DHODase {ECO:0000255|HAMAP-Rule:MF_00225};; Dihydroorotate oxidase {ECO:0000255|HAMAP-Rule:MF_00225}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Burkholderia sp. (strain 383) RepID=PYRD_BURS3
04302015_37_scaffold_19_16
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16675..17307
DNA (633bp) protein (211aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=446 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila.;"
Endonuclease III n=3 Tax=Legionella pneumophila RepID=G8UUC8_LEGPN
Endonuclease III
04302015_37_scaffold_19_17
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17300..17752
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Aquaspirillum serpens RepID=UPI0003B4AE73
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEG10501.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
04302015_37_scaffold_19_18
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17729..18430)
DNA (702bp) protein (234aa)
dnaQ; DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III epsilon subunit n=1 Tax=Janthinobacterium lividum RepID=A0SZ37_9BURK
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:ABK64077.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
04302015_37_scaffold_19_19
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18427..18867)
DNA (441bp) protein (147aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
RNaseH ribonuclease n=1 Tax=Microbulbifer variabilis RepID=UPI00036E90A8
rnhA; ribonuclease H
04302015_37_scaffold_19_20
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18888..19637)
DNA (750bp) protein (250aa)
Methyltransferase type 11 n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GHZ8_NITSI
Generic methyl-transferase
Methyltransferase type 11 {ECO:0000313|EMBL:AEJ01447.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
04302015_37_scaffold_19_21
Vibrio sp. DCR 1-4-2, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19638..20489
DNA (852bp) protein (284aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1461322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. DCR 1-4-2.;"
Hydroxyacylglutathione hydrolase n=1 Tax=Vibrio brasiliensis LMG 20546 RepID=E8M0C5_9VIBR
hydroxyacylglutathione hydrolase
04302015_37_scaffold_19_22
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20535..21521
DNA (987bp) protein (329aa)
Aldo/keto reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJZ4_9BACT
Aldo/keto reductase {ECO:0000313|EMBL:KIF83616.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
aldo/keto reductase
04302015_37_scaffold_19_23
unknown

Not on your lists

comp(21576..21701)
DNA (126bp) protein (42aa)

This feature has no annotations

04302015_37_scaffold_19_24

Not on your lists

21789..23327
DNA (1539bp) protein (513aa)
Membrane-bound lytic murein transglycosylase D (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BTB1_9ZZZZ rbh
Membrane-bound lytic murein transglycosylase D {ECO:0000313|EMBL:EQD57205.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
lytic transglycosylase catalytic subunit rbh
04302015_37_scaffold_19_25
Acinetobacter bereziniae, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23314..24987)
DNA (1674bp) protein (558aa)
putative ABC transporter ATP-binding protein (EC:3.6.3.25) rbh
Uncharacterized protein n=1 Tax=Acinetobacter bereziniae CIP 70.12 RepID=N9EG32_ACIBZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ENV91760.1}; TaxID=1217650 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter bereziniae CIP 70.12.;"
04302015_37_scaffold_19_26
Acinetobacter sp. NIPH 713, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24988..26037)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 713 RepID=N9M1R4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ENW86995.1}; TaxID=1217709 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. NIPH 713.;"
dipeptide/oligopeptide/nickel ABC transporter permease rbh
04302015_37_scaffold_19_27

Not on your lists

comp(26034..26972)
DNA (939bp) protein (313aa)
Oligopeptide ABC transporter permease protein n=1 Tax=mine drainage metagenome RepID=T1B131_9ZZZZ rbh
Oligopeptide ABC transporter permease protein {ECO:0000313|EMBL:EQD63547.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative ABC transporter permease rbh
04302015_37_scaffold_19_28
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26972..28756)
DNA (1785bp) protein (595aa)
heme-binding protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00037130B4 rbh
Dipeptide-binding ABC transporter
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Displaying items 1-30 of 62 in total

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