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04302015_37_scaffold_48

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_48_1
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

350..913
DNA (564bp) protein (188aa)
HNH endonuclease n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CRI9_VARPS
putative nuclease
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
04302015_37_scaffold_48_2
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1057..1272
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=J7M0B9_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFR42852.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
04302015_37_scaffold_48_3
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1392..1787
DNA (396bp) protein (132aa)
rhodanese n=1 Tax=Caldimonas manganoxidans RepID=UPI000375B168
Rhodanese {ECO:0000313|EMBL:KIF80139.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
rhodanese
04302015_37_scaffold_48_4
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1784..2302)
DNA (519bp) protein (173aa)
Phasin n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GXX9_CUPNN
phaP; phasin
Phasin {ECO:0000313|EMBL:AEI82199.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
04302015_37_scaffold_48_5
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2406..3710)
DNA (1305bp) protein (435aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CZD4_VARPS rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:BAP87582.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
04302015_37_scaffold_48_6
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3751..5004)
DNA (1254bp) protein (418aa)
Chromate transporter, chromate ion transporter (CHR) family n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DIQ6_METS0 rbh
chromate transporter rbh
Chromate transporter, chromate ion transporter (CHR) family {ECO:0000313|EMBL:ADI29941.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
04302015_37_scaffold_48_7

Not on your lists

comp(5004..6116)
DNA (1113bp) protein (371aa)
Fatty acid desaturase family protein n=1 Tax=mine drainage metagenome RepID=T1B9J0_9ZZZZ rbh
Fatty acid desaturase family protein {ECO:0000313|EMBL:EQD66562.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_37_scaffold_48_8
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6219..7040
DNA (822bp) protein (274aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Limnobacter sp. MED105 RepID=A6GQT4_9BURK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EDM83487.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
dehydrogenase with different specificities related to short-chain alcohol dehydrogenase
04302015_37_scaffold_48_9
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7184..9328
DNA (2145bp) protein (715aa)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:ACT51872.1}; EC=1.17.4.1 {ECO:0000313|EMBL:ACT51872.1};; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Ribonucleoside-diphosphate reductase n=2 Tax=Methylovorus RepID=C6XBA2_METSD rbh
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent rbh
04302015_37_scaffold_48_10

Not on your lists

9353..10033
DNA (681bp) protein (227aa)
Ribonucleotide reductase, alpha subunit n=1 Tax=mine drainage metagenome RepID=T0ZKM6_9ZZZZ rbh
Ribonucleotide reductase, alpha subunit {ECO:0000313|EMBL:EQD45213.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein rbh
04302015_37_scaffold_48_11

Not on your lists

10079..10429
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1CU54_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD73145.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_37_scaffold_48_12
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10429..11217
DNA (789bp) protein (263aa)
hydroxypyruvate isomerase (EC:5.3.1.22)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Hydroxypyruvate isomerase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221V8_RHOFD
04302015_37_scaffold_48_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11283..13070
DNA (1788bp) protein (596aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA83_9BRAD rbh
Type I phosphodiesterase / nucleotide pyrophosphatase {ECO:0000313|EMBL:CEG07677.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein rbh
04302015_37_scaffold_48_14
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13127..13366
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R1N2_CUPTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ69880.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
04302015_37_scaffold_48_15
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13523..13876)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0EA00
conserved protein of unknown function
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
04302015_37_scaffold_48_16
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13962..15623
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI00036E8F85 rbh
sulfate transporter rbh
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
04302015_37_scaffold_48_17
beta proteobacterium CB, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15618..16709)
DNA (1092bp) protein (364aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=beta proteobacterium CB RepID=M1SVX4_9PROT rbh
NADH:flavin oxidoreductase/NADH oxidase rbh
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:AGG33726.1}; TaxID=543913 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="beta proteobacterium CB.;"
04302015_37_scaffold_48_18
unknown

Not on your lists

16916..17020
DNA (105bp) protein (35aa)

This feature has no annotations

04302015_37_scaffold_48_19
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17074..17712)
DNA (639bp) protein (213aa)
antioxidant oxidoreductase (EC:1.11.1.7) rbh
Antioxidant (Peroxidase) oxidoreductase protein {ECO:0000313|EMBL:ADJ61670.1}; EC=1.11.1.7 {ECO:0000313|EMBL:ADJ61670.1};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
Antioxidant (Peroxidase) oxidoreductase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IUV1_HERSS rbh
04302015_37_scaffold_48_20
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17799..18290)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E28833
putative uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:BAP88658.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
04302015_37_scaffold_48_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18287..18631)
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7P1C9_CHRVO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
04302015_37_scaffold_48_22
unknown

Not on your lists

comp(18645..19196)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00037C2746
04302015_37_scaffold_48_23
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19371..20060
DNA (690bp) protein (230aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Herbaspirillum sp. CF444 RepID=J2USU2_9BURK
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL94172.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
two component response regulator protein
04302015_37_scaffold_48_24
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20069..21409
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
Signal transduction histidine kinase n=1 Tax=Herbaspirillum sp. CF444 RepID=J2M8V5_9BURK
integral membrane sensor signal transduction histidine kinase
04302015_37_scaffold_48_25
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21386..22282)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Ralstonia sp. PBA RepID=I9KUU8_9RALS
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AJW46168.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
04302015_37_scaffold_48_26
Pseudoalteromonas arctica, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22403..23416
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas arctica A 37-1-2 RepID=U1KB82_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG09811.1}; TaxID=1117313 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas arctica A 37-1-2.;"
hypothetical protein rbh
04302015_37_scaffold_48_27
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23409..24374)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00037DE7B4
oxidoreductase FAD/NAD(P)-binding domain protein
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ADE12602.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
04302015_37_scaffold_48_28
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24374..24736)
DNA (363bp) protein (121aa)
Cyanobacterial globin family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q604N2_METCA
hypothetical protein
Cyanobacterial globin family protein {ECO:0000313|EMBL:AAU91352.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
04302015_37_scaffold_48_29
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24896..25348
DNA (453bp) protein (151aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CMC8_SIDLE
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ADE12600.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
04302015_37_scaffold_48_30
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25356..26054
DNA (699bp) protein (233aa)
CBS domain-containing membrane protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SA03_9BURK
Membrane protein {ECO:0000313|EMBL:KJK22520.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
putative transmembrane protein
Displaying items 1-30 of 55 in total

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