ggKbase home page

04302015_37_scaffold_145

Search features with annotation key words

Displaying items 1-30 of 32 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_37_scaffold_145_1
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(289..720)
DNA (432bp) protein (144aa)
Transcriptional regulator, BadM/Rrf2 family n=3 Tax=Acidiphilium RepID=A5FZL3_ACICJ
BadM/Rrf2 family transcriptional regulator
HTH-type transcriptional regulator NsrR {ECO:0000313|EMBL:KDM65653.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_145_2
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

852..1268
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J070_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDM65652.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_145_3
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1265..1963
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=A5FZL1_ACICJ
hypothetical protein
Iron-sulfur cluster repair di-iron protein {ECO:0000313|EMBL:KDM65651.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_145_4
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1965..2297
DNA (333bp) protein (111aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=3 Tax=Acidiphilium RepID=A5G346_ACICJ
ferredoxin
Ferredoxin {ECO:0000313|EMBL:BAJ82782.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_37_scaffold_145_5
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2294..2743
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J067_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDM65649.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_37_scaffold_145_6
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2758..3132)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7SBX4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGO93334.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein
04302015_37_scaffold_145_7
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3129..3470)
DNA (342bp) protein (114aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Alkylhydroperoxidase AhpD core n=1 Tax=Acidiphilium sp. PM RepID=F7SBX5_9PROT
carboxymuconolactone decarboxylase family protein
04302015_37_scaffold_145_8
unknown

Not on your lists

3661..3837
DNA (177bp) protein (59aa)

This feature has no annotations

04302015_37_scaffold_145_9
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3834..4793
DNA (960bp) protein (320aa)
Cytochrome c oxidase (B(O/a)3-type) chain II {ECO:0000313|EMBL:EGO93336.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EGO93336.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Cytochrome c oxidase (B(O/a)3-type) chain II n=1 Tax=Acidiphilium sp. PM RepID=F7SBX6_9PROT
cytochrome c oxidase subunit II
04302015_37_scaffold_145_10
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4810..6474
DNA (1665bp) protein (555aa)
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:EGO93337.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EGO93337.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Cytochrome c oxidase, subunit I n=1 Tax=Acidiphilium sp. PM RepID=F7SBX7_9PROT
cytochrome c oxidase subunit I rbh
04302015_37_scaffold_145_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6661..7248
DNA (588bp) protein (196aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQD0_XANP2
5-formyltetrahydrofolate cyclo-ligase
04302015_37_scaffold_145_12
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7374..8750)
DNA (1377bp) protein (459aa)
Major Facilitator Superfamily protein n=3 Tax=Burkholderia cenocepacia RepID=B4EK79_BURCJ
major facilitator superfamily protein
Major Facilitator Superfamily protein {ECO:0000313|EMBL:CAR55472.1}; TaxID=216591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656; / NCTC 13227 / J2315 / CF5610) (Burkholderia cepacia (strain J2315)).;"
04302015_37_scaffold_145_13
bacterium YEK0313, Bacteria

Not on your lists

8987..9325
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI000345EC9D
HTH-type transcriptional regulator CmtR {ECO:0000313|EMBL:CEJ14009.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Transcriptional regulator
04302015_37_scaffold_145_14
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9360..9686
DNA (327bp) protein (109aa)
Transcriptional regulator, ArsR-family n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IIW1_BORPD
ArsR family transcriptional regulator {ECO:0000313|EMBL:KJJ95494.1}; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;"
Transcriptional regulator
04302015_37_scaffold_145_15

Not on your lists

9835..10251
DNA (417bp) protein (139aa)
Plasmid stability protein n=1 Tax=mine drainage metagenome RepID=T1AMV0_9ZZZZ
Plasmid stability protein {ECO:0000313|EMBL:EQD57818.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_37_scaffold_145_16

Not on your lists

10248..10670
DNA (423bp) protein (141aa)
PilT domain-containing protein n=1 Tax=mine drainage metagenome RepID=T1AKE7_9ZZZZ
PilT domain-containing protein {ECO:0000313|EMBL:EQD57817.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_37_scaffold_145_17
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10667..11329
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0002F0FE2A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFG69324.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
04302015_37_scaffold_145_18
unknown

Not on your lists

11330..11548
DNA (219bp) protein (73aa)

This feature has no annotations

04302015_37_scaffold_145_19
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11693..13360
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TXG2_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDP62772.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative transposase for insertion sequence element
04302015_37_scaffold_145_20
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13472..14518)
DNA (1047bp) protein (349aa)
Putative C4-dicarboxylate transporter protein n=1 Tax=planctomycete KSU-1 RepID=I3IQE6_9PLAN
C4-dicarboxylate transporter
Tax=BJP_IG2069_Desfulfarculales_53_13
04302015_37_scaffold_145_21
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14754..15797
DNA (1044bp) protein (348aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FWP4_ACICJ rbh
transposase IS116/IS110/IS902 family protein rbh
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:ABQ30026.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_37_scaffold_145_22
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16390..17838
DNA (1449bp) protein (483aa)
Respiratory nitrate reductase subunit alpha NarG n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B455_9RHIZ
respiratory nitrate reductase subunit alpha NarG
Respiratory nitrate reductase subunit alpha NarG {ECO:0000313|EMBL:AGK58304.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
04302015_37_scaffold_145_23
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17810..20086
DNA (2277bp) protein (759aa)
Respiratory nitrate reductase subunit alpha NarG n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B455_9RHIZ
Respiratory nitrate reductase subunit alpha NarG {ECO:0000313|EMBL:AGK58304.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
respiratory nitrate reductase subunit alpha NarG
04302015_37_scaffold_145_24
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20092..21633
DNA (1542bp) protein (514aa)
Nitrate reductase A subunit beta n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BDU8_9RHIZ rbh
narH; nitrate reductase A subunit beta rbh
Nitrate reductase A subunit beta {ECO:0000313|EMBL:AGK58305.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
04302015_37_scaffold_145_25
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21639..22304
DNA (666bp) protein (222aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCP6_9RHIZ
nitrate reductase molybdenum cofactor assembly chaperone
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:AGK58306.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
04302015_37_scaffold_145_26
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22312..23025
DNA (714bp) protein (238aa)
Respiratory nitrate reductase subunit gamma n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7R5_9RHIZ
respiratory nitrate reductase subunit gamma
Respiratory nitrate reductase subunit gamma {ECO:0000313|EMBL:AGK58307.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
04302015_37_scaffold_145_27
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23022..23732
DNA (711bp) protein (237aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5K8_9RHIZ
PpiC-type peptidyl-prolyl cis-trans isomerase
04302015_37_scaffold_145_28
unknown

Not on your lists

23848..24159
DNA (312bp) protein (104aa)

This feature has no annotations

04302015_37_scaffold_145_29
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24237..24677
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZWG7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO96459.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
04302015_37_scaffold_145_30
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24765..25037
DNA (273bp) protein (91aa)
FeS assembly SUF system protein SufT n=1 Tax=Dyella ginsengisoli RepID=UPI00034C5982
FeS assembly SUF system protein SufT {ECO:0000313|EMBL:KFN51067.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
putative FeS assembly SUF system protein SufT
Displaying items 1-30 of 32 in total

View Taxonomy