ggKbase home page

bjp_ig2157_scaffold_374

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2157_scaffold_374_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..108
DNA (108bp) protein (36aa)
response regulator receiver/ANTAR domain-containing protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
response regulator receiver/ANTAR domain-containing protein id=5079239 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
bjp_ig2157_scaffold_374_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112..1866
DNA (1755bp) protein (585aa)
protein kinase Tax=GWE1_Burkholderiales_65_30_curated
protein kinase id=5079240 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
protein kinase
bjp_ig2157_scaffold_374_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2331..2690)
DNA (360bp) protein (120aa)
globin; K06886 hemoglobin id=5079241 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
globin; K06886 hemoglobin Tax=GWE1_Burkholderiales_65_30_curated
globin
bjp_ig2157_scaffold_374_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2706..2909)
DNA (204bp) protein (68aa)
id=5079242 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
id=5079242 Tax=GWE1_Burkholderiales_65_30_curated
bjp_ig2157_scaffold_374_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3043..6240
DNA (3198bp) protein (1066aa)
SARP family transcriptional regulator Tax=GWE1_Burkholderiales_65_30_curated
SARP family transcriptional regulator id=5079243 bin=GWF1_Burkholderiales_GWF1_66_17 species=Gordonia rhizosphera genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
SARP family transcriptional regulator
bjp_ig2157_scaffold_374_6
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6450..6962)
DNA (513bp) protein (171aa)
SAM-dependent methyltransferase n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N9D0_9BURK
SAM-dependent methyltransferase
SAM-dependent methyltransferase {ECO:0000313|EMBL:AGX86809.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mo
bjp_ig2157_scaffold_374_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7586..7954
DNA (369bp) protein (123aa)
Uncharacterized protein id=1274322 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_374_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8072..8356)
DNA (285bp) protein (95aa)
hypothetical protein id=5079246 bin=GWF1_Burkholderiales_GWF1_66_17 species=Pseudomonas sp. GM41(2012) genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_374_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8492..9763)
DNA (1272bp) protein (424aa)
D-isomer specific 2-hydroxyacid dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] id=5079247 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
D-isomer specific 2-hydroxyacid dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWE1_Burkholderiales_65_30_curated
D-isomer specific 2-hydroxyacid dehydrogenase
bjp_ig2157_scaffold_374_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9849..10967)
DNA (1119bp) protein (373aa)
hypothetical protein; K07168 CBS domain-containing membrane protein id=5079248 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein; K07168 CBS domain-containing membrane protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein rbh
bjp_ig2157_scaffold_374_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11007..11702)
DNA (696bp) protein (232aa)
hypothetical protein; K02020 molybdate transport system substrate-binding protein id=5079249 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein; K02020 molybdate transport system substrate-binding protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_374_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11928..13142)
DNA (1215bp) protein (405aa)
major facilitator superfamily protein; K02575 MFS transporter, NNP family, nitrate/nitrite transporter id=5079250 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative nitrate transporter NasA Tax=GWE1_Burkholderiales_65_30_curated
putative nitrate transporter NasA
bjp_ig2157_scaffold_374_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13489..14301)
DNA (813bp) protein (271aa)
nitrate transport ATP-binding subunits C and D; K15578 nitrate/nitrite transport system ATP-binding protein [EC:3.6.3.-] id=5079251 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
nitrate ABC transporter ATPases C Tax=GWE1_Burkholderiales_65_30_curated
nitrate ABC transporter ATPases C
bjp_ig2157_scaffold_374_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14298..15233)
DNA (936bp) protein (312aa)
nitrate ABC transporter inner membrane subunit; K15577 nitrate/nitrite transport system permease protein id=5079252 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
nrtB; nitrate ABC transporter, permease protein NrtB Tax=GWE1_Burkholderiales_65_30_curated
nrtB; nitrate ABC transporter, permease protein NrtB
bjp_ig2157_scaffold_374_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15378..16655)
DNA (1278bp) protein (426aa)
Twin-arginine translocation pathway signal id=1274314 bin=GWE1_Burkholderiales_65_30 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
twin-arginine translocation pathway signal protein Tax=GWE1_Burkholderiales_65_30_curated
twin-arginine translocation pathway signal protein
bjp_ig2157_scaffold_374_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17020..18291)
DNA (1272bp) protein (424aa)
hypothetical protein id=5079254 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_374_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18402..19484
DNA (1083bp) protein (361aa)
metalloendopeptidase, glycoprotease family (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=GWE1_Burkholderiales_65_30_curated
metalloendopeptidase, glycoprotease family (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp id=1274312 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
bjp_ig2157_scaffold_374_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19632..20921
DNA (1290bp) protein (430aa)
putative transporter signal peptide protein; K01999 branched-chain amino acid transport system substrate-binding protein id=5079256 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative transporter signal peptide protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWE1_Burkholderiales_65_30_curated
putative transporter signal peptide protein
bjp_ig2157_scaffold_374_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20948..22132
DNA (1185bp) protein (395aa)
aspartate aminotransferase (EC:2.6.1.1) Tax=GWE1_Burkholderiales_65_30_curated
aspartate aminotransferase (EC:2.6.1.1)
aspartate aminotransferase id=5079257 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
bjp_ig2157_scaffold_374_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22125..22994)
DNA (870bp) protein (290aa)
LysR family transcriptional regulator id=5079258 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
LysR family transcriptional regulator Tax=GWE1_Burkholderiales_65_30_curated
LysR family transcriptional regulator
bjp_ig2157_scaffold_374_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23117..23833
DNA (717bp) protein (239aa)
UbiE/COQ5 family methlytransferase id=5079259 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
methyltransferase Tax=GWE1_Burkholderiales_65_30_curated
methyltransferase
bjp_ig2157_scaffold_374_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23982..24536
DNA (555bp) protein (185aa)
Putative uncharacterized protein id=5079260 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Putative uncharacterized protein Tax=GWE1_Burkholderiales_65_30_curated
bjp_ig2157_scaffold_374_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24554..24946
DNA (393bp) protein (131aa)
Uncharacterized protein id=5079261 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_374_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25127..25393
DNA (267bp) protein (89aa)
30S ribosomal protein S15 id=1274305 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rpsO; 30S ribosomal protein S15
Tax=BJP_08E140C01_Burkholderiales_65_30
bjp_ig2157_scaffold_374_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25654..27786
DNA (2133bp) protein (711aa)
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=GWE1_Burkholderiales_65_30_curated
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase id=1274304 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
bjp_ig2157_scaffold_374_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27804..28793
DNA (990bp) protein (330aa)
NAD(P)h quinone oxidoreductase id=1274303 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Zeta-crystallin Tax=GWE1_Burkholderiales_65_30_curated
Zeta-crystallin
bjp_ig2157_scaffold_374_27
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28811..29557
DNA (747bp) protein (249aa)
Triose-phosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] id=5079265 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
tpiA; triosephosphate isomerase (EC:5.3.1.1) Tax=GWE1_Burkholderiales_65_30_curated
tpiA; triosephosphate isomerase (EC:5.3.1.1)
bjp_ig2157_scaffold_374_28
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29594..29986
DNA (393bp) protein (131aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG id=5079266 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=GWE1_Burkholderiales_65_30_curated
preprotein translocase subunit SecG
Displaying 28 items

View Taxonomy