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bjp_ig2157_scaffold_2238

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2157_scaffold_2238_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..500)
DNA (498bp) protein (166aa)
hypothetical protein id=5082079 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_2238_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(442..1050)
DNA (609bp) protein (203aa)
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24] id=5082080 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=GWE1_Burkholderiales_65_30_curated
coaE; dephospho-CoA kinase
bjp_ig2157_scaffold_2238_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1053..1913)
DNA (861bp) protein (287aa)
pilD; type 4 prepilin s leader peptide processing enzyme; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=5082081 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
pilD; type 4 prepilin s leader peptide processing enzyme; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=GWE1_Burkholderiales_65_30_curated
pilD; type 4 prepilin s leader peptide processing enzyme
bjp_ig2157_scaffold_2238_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1913..3130)
DNA (1218bp) protein (406aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC id=5082082 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
type II secretion system protein
Tax=BJP_08E140C01_Burkholderiales_65_30
bjp_ig2157_scaffold_2238_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3161..4861)
DNA (1701bp) protein (567aa)
pilB; type 4 fimbrial assembly protein pilB traffic ATPase; K02652 type IV pilus assembly protein PilB id=5082083 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
pilB; type 4 fimbrial assembly protein pilB traffic ATPase; K02652 type IV pilus assembly protein PilB Tax=GWE1_Burkholderiales_65_30_curated
pilB; type 4 fimbrial assembly protein pilB traffic ATPase
bjp_ig2157_scaffold_2238_trna_1
unknown

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comp(5065..5138)
DNA (74bp)
transferRNA
bjp_ig2157_scaffold_2238_6
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5190..6152)
DNA (963bp) protein (321aa)
Dimethylallyltranstransferase id=1270334 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
polyprenyl synthetase
Tax=BJP_08E140C01_Burkholderiales_65_30
bjp_ig2157_scaffold_2238_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6390..6491
DNA (102bp) protein (34aa)
50S ribosomal protein L21 n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KP51_9BURK
ribosomal protein L21
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying 8 items

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