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bjp_ig2157_scaffold_1107

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2157_scaffold_1107_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..936)
DNA (936bp) protein (312aa)
aldehyde dehydrogenase id=5082857 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
aldehyde dehydrogenase Tax=GWE1_Burkholderiales_65_30_curated
NAD-dependent aldehyde dehydrogenase
bjp_ig2157_scaffold_1107_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(968..1783)
DNA (816bp) protein (272aa)
ABC transporter-like protein id=5082858 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ABC transporter-like protein Tax=GWE1_Burkholderiales_65_30_curated
ABC-type branched-chain amino acid transport system, ATPase component
bjp_ig2157_scaffold_1107_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1780..2598)
DNA (819bp) protein (273aa)
ABC-type branched-chain amino acid transport system, ATPase component id=1274536 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter-like protein Tax=GWE1_Burkholderiales_65_30_curated
ABC-type branched-chain amino acid transport systems, ATPase component
bjp_ig2157_scaffold_1107_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2588..3616)
DNA (1029bp) protein (343aa)
ABC transporter ATP-binding protein id=1274537 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
branched-chain amino acid transport system permease LivM Tax=GWE1_Burkholderiales_65_30_curated
ABC-type branched-chain amino acid transport system, permease component
bjp_ig2157_scaffold_1107_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3613..4515)
DNA (903bp) protein (301aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=5082861 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
High-affinity branched-chain amino acid transporter permease LivH Tax=GWE1_Burkholderiales_65_30_curated
branched-chain amino acid ABC-type transport system, permease component
bjp_ig2157_scaffold_1107_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4647..5843)
DNA (1197bp) protein (399aa)
Twin-arginine translocation pathway signal; K01999 branched-chain amino acid transport system substrate-binding protein id=5082862 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
branched-chain amino acid ABC transporter substrate-binding protein Tax=GWE1_Burkholderiales_65_30_curated
ABC-type branched-chain amino acid transport systems, periplasmic component
bjp_ig2157_scaffold_1107_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6036..7022
DNA (987bp) protein (329aa)
helix-turn-helix domain-containing protein id=5082863 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
helix-turn-helix domain-containing protein Tax=GWE1_Burkholderiales_65_30_curated
helix-turn-helix domain-containing protein
bjp_ig2157_scaffold_1107_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7091..8143)
DNA (1053bp) protein (351aa)
holA; DNA polymerase III subunit delta (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7] id=5082864 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
holA; DNA polymerase III subunit delta (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=GWE1_Burkholderiales_65_30_curated
holA; DNA polymerase III subunit delta (EC:2.7.7.7)
bjp_ig2157_scaffold_1107_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8151..8696)
DNA (546bp) protein (182aa)
rare lipoprotein B; K03643 LPS-assembly lipoprotein id=5082865 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
rare lipoprotein B; K03643 LPS-assembly lipoprotein Tax=GWE1_Burkholderiales_65_30_curated
rare lipoprotein B
bjp_ig2157_scaffold_1107_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8756..10996)
DNA (2241bp) protein (747aa)
leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=GWE1_Burkholderiales_65_30_curated
Leucine--tRNA ligase id=1274543 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
leuS; leucyl-tRNA synthetase
Displaying 10 items

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