ggKbase home page

07V140M03_2016_Ig8141_scaffold_15801

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07V140M03_2016_Ig8141_scaffold_15801_1
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..133
DNA (132bp) protein (44aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E336_GEOLS
transposase IS204/IS1001/IS1096/IS1165 family protein
Transposase IS204/IS1001/IS1096/IS1165 family protein {ECO:0000313|EMBL:ACD94248.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
07V140M03_2016_Ig8141_scaffold_15801_2
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


286..480
DNA (195bp) protein (65aa)
50S ribosomal protein L28 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PR51_DESSD
LSU ribosomal protein L28P
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_15801_3
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(632..2746)
DNA (2115bp) protein (705aa)
(p)ppGpp synthetase I, SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6K3_DESAT
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_4
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2826..4550)
DNA (1725bp) protein (575aa)
Proline--tRNA ligase Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6K4_DESAT
prolyl-tRNA synthetase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_5
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4774..5850)
DNA (1077bp) protein (359aa)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6K5_DESAT
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_6
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6114..6338
DNA (225bp) protein (75aa)
Uncharacterized protein Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SWV2_META2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE22018.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
07V140M03_2016_Ig8141_scaffold_15801_7
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6313..6885
DNA (573bp) protein (191aa)
Cation antiporter Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C350_NITHN
Putative monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:EXI66272.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
cation antiporter
07V140M03_2016_Ig8141_scaffold_15801_8
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6882..7163
DNA (282bp) protein (94aa)
Multisubunit sodium/proton antiporter, MrpF subunit Tax=Nitrosococcus oceani RepID=Q3JBL0_NITOC
multiple resistance and pH regulation protein F
Tax=BJP_IG2102_Gammaproteobacteria_62_140
07V140M03_2016_Ig8141_scaffold_15801_9
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7147..7458
DNA (312bp) protein (104aa)
Na+/H+ antiporter subunit Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DS39_THIND
Na+/H+ antiporter subunit
Tax=BJP_IG2102_Gammaproteobacteria_62_140
07V140M03_2016_Ig8141_scaffold_15801_10
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7455..7709
DNA (255bp) protein (85aa)
Putative uncharacterized protein Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G4V2_9GAMM
protein of unknown function (DUF4040)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
07V140M03_2016_Ig8141_scaffold_15801_11
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7706..8362
DNA (657bp) protein (219aa)
Na+/H+ antiporter MnhB subunit-related protein Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGB3_9GAMM
Na+/H+ antiporter MnhB subunit-related protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
07V140M03_2016_Ig8141_scaffold_15801_12
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8359..8661
DNA (303bp) protein (101aa)
NADH-ubiquinone oxidoreductase, chain 4L Tax=Thioalkalivibrio RepID=L0DS44_THIND
NADH-ubiquinone oxidoreductase
Tax=CG_Rhodof_03
07V140M03_2016_Ig8141_scaffold_15801_13
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8654..10084
DNA (1431bp) protein (477aa)
NADH/Ubiquinone/plastoquinone (Complex I) Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I3L5_RHOVT
NADH/ubiquinone/plastoquinone
Tax=CG_Rhodof_03
07V140M03_2016_Ig8141_scaffold_15801_14
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10081..11592
DNA (1512bp) protein (504aa)
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit Tax=Thiorhodovibrio sp. 970 RepID=H8Z242_9GAMM
Multiple resistance and pH homeostasis protein D {ECO:0000313|EMBL:EXI66279.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
NADH dehydrogenase subunit M
07V140M03_2016_Ig8141_scaffold_15801_15
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11580..13070
DNA (1491bp) protein (497aa)
Hydrogenase-4 component B {ECO:0000313|EMBL:EXI91104.1}; EC=1.-.-.- {ECO:0000313|EMBL:EXI91104.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
NADH/Ubiquinone/plastoquinone (Complex I) Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DRZ9_THIND
formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
07V140M03_2016_Ig8141_scaffold_15801_16
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13468..13668
DNA (201bp) protein (67aa)
Uncharacterized protein Tax=delta proteobacterium MLMS-1 RepID=Q1NLG0_9DELT
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_15801_17
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13731..14840
DNA (1110bp) protein (370aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=delta proteobacterium MLMS-1 RepID=Q1NLG1_9DELT
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_18
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14847..15119)
DNA (273bp) protein (91aa)
Regulatory protein, FmdB family Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6L1_DESAT
regulatory protein, FmdB family
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_15801_19
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15359..15682
DNA (324bp) protein (108aa)
Putative uncharacterized protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6L2_DESAT
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
07V140M03_2016_Ig8141_scaffold_15801_20
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15770..16636
DNA (867bp) protein (289aa)
Metal dependent phosphohydrolase Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6L3_DESAT
metal dependent phosphohydrolase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_21
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16680..17609
DNA (930bp) protein (310aa)
Response regulator receiver modulated diguanylate cyclase Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6L4_DESAT
response regulator receiver modulated diguanylate cyclase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_22
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17903..18376
DNA (474bp) protein (158aa)
Transcriptional regulator, Ros/MucR family (Fragment) Tax=uncultured bacterium RepID=K1ZSR4_9BACT
MucR family transcriptional regulator
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_23

Not on your lists

18617..19429
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase Tax=uncultured bacterium RepID=K1Z8C0_9BACT
07V140M03_2016_Ig8141_scaffold_15801_24

Not on your lists

19426..20100
DNA (675bp) protein (225aa)
Outer membrane lipoprotein carrier protein LolA Tax=uncultured bacterium RepID=K1YU91_9BACT
Outer membrane lipoprotein carrier protein LolA {ECO:0000313|EMBL:EKD40717.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
outer membrane lipoprotein carrier protein LolA
07V140M03_2016_Ig8141_scaffold_15801_25
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20299..22134
DNA (1836bp) protein (612aa)
Bacteriocin maturation radical SAM protein 1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PAK3_DESSD
bacteriocin maturation radical SAM protein 1
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_26
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22131..22682
DNA (552bp) protein (184aa)
cobU_cobP; cobalamin biosynthesis enzyme (EC:2.7.1.156 2.7.7.62)
Cobalamin biosynthesis enzyme Tax=Sphingobium RepID=D4Z873_SPHJU
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_27
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22685..23776
DNA (1092bp) protein (364aa)
adenosylcobyric acid synthase (glutamine-hydrolysing), L-threonine O-3-phosphate decarboxylase (EC:4.1.1.81 6.3.5.10)
Adenosylcobyric acid synthase (Glutamine-hydrolysing), L-threonine O-3-phosphate decarboxylase Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CF31_DESTA
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_15801_28
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23773..24285
DNA (513bp) protein (171aa)
Phosphodiesterase, MJ0936 family Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6N0_DESAT
phosphodiesterase, MJ0936 family
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_29
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24439..25668
DNA (1230bp) protein (410aa)
RNA binding S1 domain protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z1G1_DESAT
RNA binding S1 domain protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_15801_30
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25727..26128)
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P694_DESSD
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
Displaying items 1-30 of 71 in total

View Taxonomy