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07V140M03_2016_Ig8141_scaffold_29756

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Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07V140M03_2016_Ig8141_scaffold_29756_1
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

405..4055
DNA (3651bp) protein (1217aa)
PAS Tax=delta proteobacterium MLMS-1 RepID=Q1NRX0_9DELT
GAF sensor hybrid histidine kinase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_2
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4057..5469
DNA (1413bp) protein (471aa)
Putative two component, sigma54 specific, transcriptional regulator, Fis family Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z204_DESAT
Fis family transcriptional regulator
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_3
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5771..6160
DNA (390bp) protein (130aa)
Putative uncharacterized protein Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RED7_DESPD
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_4
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6217..7818
DNA (1602bp) protein (534aa)
Methyl-accepting chemotaxis sensory transducer Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z479_DESAT
methyl-accepting chemotaxis sensory transducer
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_5
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8044..10626
DNA (2583bp) protein (861aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035FA335
PAS/PAC-containing diguanylate cyclase/phosphodiesterase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_6
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10662..10928
DNA (267bp) protein (89aa)
Putative uncharacterized protein Tax=Burkholderia xenovorans (strain LB400) RepID=Q13X22_BURXL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE31367.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
07V140M03_2016_Ig8141_scaffold_29756_7
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10985..11593
DNA (609bp) protein (203aa)
RNA-directed DNA polymerase (Reverse transcriptase) Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RRF3_ALLVD
RNA-directed DNA polymerase
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:ADC63865.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
07V140M03_2016_Ig8141_scaffold_29756_8

Not on your lists

11732..12145
DNA (414bp) protein (138aa)
Retron-type reverse transcriptase bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=Dehalobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Reverse transcriptase/maturase {ECO:0000313|EMBL:EQD74655.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA polymerase
07V140M03_2016_Ig8141_scaffold_29756_9
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

12145..12429
DNA (285bp) protein (95aa)
RNA-directed DNA polymerase bin=GWA2_Elusimicrobia_56_46 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
RNA-directed DNA polymerase
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
07V140M03_2016_Ig8141_scaffold_29756_10
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12916..14061
DNA (1146bp) protein (382aa)
Peptidase lipoprotein, M48 family, TPR domain-containing Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A596_PELCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF08013.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
07V140M03_2016_Ig8141_scaffold_29756_11
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14067..14795)
DNA (729bp) protein (243aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1Y9W4_9BACT
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
07V140M03_2016_Ig8141_scaffold_29756_12
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15051..16532
DNA (1482bp) protein (494aa)
Putative PAS/PAC sensor protein bin=GWC2_Chloroflexi_49_37 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
putative PAS/PAC sensor protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_13
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16670..18067
DNA (1398bp) protein (466aa)
Uncharacterized protein Tax=Bacillus azotoformans LMG 9581 RepID=K6EBG2_BACAZ
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_14
CG_Delta_06, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18178..20610
DNA (2433bp) protein (811aa)
Signal transduction histidine kinase, nitrogen specific, NtrB (Fragment) Tax=uncultured bacterium RepID=K1YU29_9BACT
PAS domain S-box
Tax=CG_Delta_06
07V140M03_2016_Ig8141_scaffold_29756_15
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20591..22417
DNA (1827bp) protein (609aa)
two component system sensor histidine kinase (EC:2.7.13.3)
Two component system sensor histidine kinase Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NQT9_DESTT
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_16
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22437..22877
DNA (441bp) protein (147aa)
Response regulator receiver protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6I7_DESAT
response regulator receiver protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_17
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22894..23346
DNA (453bp) protein (151aa)
heat shock protein Hsp20 Tax=Thermodesulfatator atlanticus RepID=UPI0003B6869A
HspC2 heat shock protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_18
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23467..25161
DNA (1695bp) protein (565aa)
Uncharacterized protein Tax=Ralstonia pickettii DTP0602 RepID=U3QGD0_RALPI
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_19
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25158..25943
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Ralstonia pickettii DTP0602 RepID=U3QMI0_RALPI
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
07V140M03_2016_Ig8141_scaffold_29756_20
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25951..27279
DNA (1329bp) protein (443aa)
Permease of the major facilitator superfamily Tax=Burkholderiaceae RepID=Q0KC48_CUPNH
melB; major facilitator superfamily permease
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_21
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27298..30132
DNA (2835bp) protein (945aa)
Uncharacterized protein Tax=Ralstonia pickettii DTP0602 RepID=U3QJ02_RALPI
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
07V140M03_2016_Ig8141_scaffold_29756_22
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30205..32118)
DNA (1914bp) protein (638aa)
Uncharacterized protein Tax=Desulfotalea psychrophila (strain LSv54 / DSM 12343) RepID=Q6AJV1_DESPS
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_23
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32392..33282
DNA (891bp) protein (297aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PT18_DESSD
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_24
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33293..33520)
DNA (228bp) protein (76aa)
hypothetical protein Tax=Holospora obtusa RepID=UPI0003AECCCA
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_25
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33745..34173
DNA (429bp) protein (143aa)
Peptidyl-prolyl cis-trans isomerase Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z6I8_DESAT
peptidylprolyl isomerase FKBP-type
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_26
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34185..35234
DNA (1050bp) protein (350aa)
Uncharacterized protein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PNK0_DESSD
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
07V140M03_2016_Ig8141_scaffold_29756_27
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35553..36590
DNA (1038bp) protein (346aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P8L9_DESSD
TRAP-type C4-dicarboxylate transport system, periplasmic component
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_28
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36587..37129
DNA (543bp) protein (181aa)
TRAP-type C4-dicarboxylate transport system, small permease component Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P3G0_DESSD
TRAP-type C4-dicarboxylate transport system, small permease component
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_29
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37138..38403
DNA (1266bp) protein (422aa)
TRAP transporter, DctM subunit Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1NE78_DESSD
TRAP transporter, DctM subunit
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
07V140M03_2016_Ig8141_scaffold_29756_30
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38406..39428)
DNA (1023bp) protein (341aa)
Putative uncharacterized protein Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RJW7_DESPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW17608.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
Displaying items 1-30 of 73 in total

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