ggKbase home page

07V140M03_2016_Ig8141_scaffold_48915

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07V140M03_2016_Ig8141_scaffold_48915_1
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..150)
DNA (150bp) protein (50aa)
Elongation factor Tu Tax=uncultured bacterium RepID=C5JB86_9BACT
tuf-1; elongation factor Tu
Tax=GWD2_Desulfuromonadales_61_12_curated
07V140M03_2016_Ig8141_scaffold_48915_trna_4
unknown

Not on your lists

comp(270..342)
DNA (73bp)
transferRNA Thr
07V140M03_2016_Ig8141_scaffold_48915_trna_3
unknown

Not on your lists

comp(379..452)
DNA (74bp)
transferRNA Gly
07V140M03_2016_Ig8141_scaffold_48915_trna_2
unknown

Not on your lists

comp(561..642)
DNA (82bp)
transferRNA Tyr
07V140M03_2016_Ig8141_scaffold_48915_trna_1
unknown

Not on your lists

comp(696..768)
DNA (73bp)
transferRNA Thr
07V140M03_2016_Ig8141_scaffold_48915_2
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1019..2062
DNA (1044bp) protein (348aa)
Membrane protein, UPF0118 superfamily Tax=Geobacter sulfurreducens RepID=D7AGZ2_GEOSK
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_3
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2425..4272
DNA (1848bp) protein (616aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] bin=GWD2_Desulfuromonadales_54_10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_4
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4361..5770)
DNA (1410bp) protein (470aa)
protease Do (EC:3.4.21.107)
Protease Do Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9H0_GEOUR
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_5
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6067..7188
DNA (1122bp) protein (374aa)
Hydrogenase (NiFe) small subunit HydA bin=GWC2_Pelobacter_58_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hydrogenase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_6
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7191..8903
DNA (1713bp) protein (571aa)
hydrogenase 2 large subunit Tax=Geopsychrobacter electrodiphilus RepID=UPI00036B4BE6
hydrogenase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_7
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8922..9575
DNA (654bp) protein (218aa)
membrane protein
Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, cytochrome b subunit bin=GWC2_Pelobacter_58_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_8
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9575..10093
DNA (519bp) protein (173aa)
Hydrogenase maturation protease bin=GWC2_Pelobacter_58_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
membrane protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_9
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10053..10295
DNA (243bp) protein (81aa)
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_10
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10227..10655)
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=planctomycete KSU-1 RepID=I3IHV2_9PLAN
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_11
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10934..12295)
DNA (1362bp) protein (454aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
trmFO; tRNA (uracil-5-)-methyltransferase Gid
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_12
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12355..14733)
DNA (2379bp) protein (793aa)
DNA topoisomerase I
DNA topoisomerase bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_13
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14805..15272)
DNA (468bp) protein (156aa)
Protein Smg homolog Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A7H7_PELCD
smg; hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_14
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15313..16407)
DNA (1095bp) protein (365aa)
DNA protection single-strand-binding protein DprA bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
dprA; DNA protection single-strand-binding protein DprA
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_15
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16426..17526)
DNA (1101bp) protein (367aa)
Peptidoglycan-binding LysM bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
LysM domain-containing protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_16
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17734..18957
DNA (1224bp) protein (408aa)
Peptidase U32 bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
peptidase U32
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_17
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18954..20546)
DNA (1593bp) protein (531aa)
RNA methyltransferase, TrmA family Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A1Z9_PELCD
TrmA family RNA methyltransferase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_18
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21337..22899
DNA (1563bp) protein (521aa)
id=4329444 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_19
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22916..23896
DNA (981bp) protein (327aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae-rel_56_14 species=Bermanella marisrubri genus=Bermanella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_20
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23883..24434
DNA (552bp) protein (184aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae-rel_56_14 species=Bermanella marisrubri genus=Bermanella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_21
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24475..24999
DNA (525bp) protein (175aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8S6_GEOLS
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_22
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25051..25524
DNA (474bp) protein (158aa)
NosL family protein bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
NosL family protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_23
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25526..26164
DNA (639bp) protein (213aa)
Lipolytic enzyme, G-D-S-L family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GET3_GEOUR
GDSL family lipase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_48915_24
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26168..26503)
DNA (336bp) protein (112aa)
Cupin 2, conserved barrel domain protein bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
cupin
Tax=BJP_IG2157_Desulfuromonadales_56_134
Displaying 28 items

View Taxonomy