ggKbase home page

07V140M03_2016_Ig8141_scaffold_35953

Search features with annotation key words

Displaying items 1-30 of 183 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07V140M03_2016_Ig8141_scaffold_35953_1
unknown

Not on your lists

comp(1..72)
DNA (72bp) protein (24aa)

This feature has no annotations

07V140M03_2016_Ig8141_scaffold_35953_2
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(441..1148)
DNA (708bp) protein (236aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3D0_GEOUR
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_3
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1266..2105
DNA (840bp) protein (280aa)
RNA polymerase sigma factor Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A1Y6_PELCD
RNA polymerase sigma 70
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_4
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2280..2948)
DNA (669bp) protein (223aa)
4'-phosphopantetheinyl transferase bin=GWC2_Pelobacter_58_13 species=Richelia intracellularis genus=Richelia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
4'-phosphopantetheinyl transferase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_5
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2945..3946)
DNA (1002bp) protein (334aa)
3-beta hydroxysteroid dehydrogenase/isomerase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFJ2_GEOUR
3-beta hydroxysteroid dehydrogenase/isomerase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_6
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3943..5613)
DNA (1671bp) protein (557aa)
AMP-dependent synthetase and ligase bin=GWC2_Pelobacter_58_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
peptide synthase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_7
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5618..6514)
DNA (897bp) protein (299aa)
Alpha/beta hydrolase fold protein bin=GWC2_Pelobacter_58_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
alpha/beta hydrolase fold protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_8
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6508..7551)
DNA (1044bp) protein (348aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-Oxoacyl-(Acyl-carrier-protein (ACP)) synthase III C terminal domain protein bin=GWC2_Pelobacter_58_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_9
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7653..8315)
DNA (663bp) protein (221aa)
Peptidase M50 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVP1_DESAC
peptidase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_10
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8368..11007)
DNA (2640bp) protein (880aa)
Adenosine-specific tRNA nucleotidyltransferase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
polya polymerase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_11
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11008..11475)
DNA (468bp) protein (156aa)
hypothetical protein Tax=Erwinia toletana RepID=UPI000347FF7C
cysteine methyltransferase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_12
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11684..11947
DNA (264bp) protein (88aa)
30S ribosomal protein S20 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
rpsT; 30S ribosomal protein S20
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_13
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12001..12993)
DNA (993bp) protein (331aa)
holA; DNA polymerase III subunit delta
DNA polymerase III, delta subunit bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_14
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12999..13517)
DNA (519bp) protein (173aa)
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_15
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13522..16068)
DNA (2547bp) protein (849aa)
Leucine--tRNA ligase Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXG3_DESAC
leuS; leucyl-tRNA ligase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_16
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16224..16442)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 bin=GWC2_Pelobacter_58_13 species=unknown genus=unknown taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
infA; translation initiation factor IF-1
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_17
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16540..16920)
DNA (381bp) protein (127aa)
Response regulator receiver protein Tax=Geobacter sp. (strain M18) RepID=E8WP46_GEOS8
response regulator receiver protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_18
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16941..17765)
DNA (825bp) protein (275aa)
Putative GAF sensor protein bin=GWC2_Pelobacter_58_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
GAF sensor protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_19
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17813..18883)
DNA (1071bp) protein (357aa)
Chemotaxis response regulator protein-glutamate methylesterase bin=GWC2_Pelobacter_58_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
cheB40H-1; protein glutamate methylesterase CheB associated with MCPs of class 40H, response receiver domain-containing
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_20
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18880..19761)
DNA (882bp) protein (294aa)
Chemotaxis protein methyltransferase bin=GWC2_Pelobacter_58_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
chemotaxis protein CheR
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_21
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19762..21771)
DNA (2010bp) protein (670aa)
PBS lyase HEAT domain protein repeat-containing protein bin=GWC2_Pelobacter_58_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_22
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21798..22700)
DNA (903bp) protein (301aa)
Response regulator receiver protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9E6_GEODF
response regulator receiver protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_23
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22716..23258)
DNA (543bp) protein (181aa)
Scaffold protein CheW associated with MCPs of class 40H bin=GWC2_Pelobacter_58_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_24
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23255..23626)
DNA (372bp) protein (124aa)
Chemotaxis protein CheY bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
chemotaxis protein CheY
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_25
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23645..24406)
DNA (762bp) protein (254aa)
CheW protein bin=GWC2_Pelobacter_58_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
CheW protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_26
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24410..25225)
DNA (816bp) protein (272aa)
ATPase, putative bin=GWC2_Pelobacter_58_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
ATPase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_27
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25218..27284)
DNA (2067bp) protein (689aa)
CheA signal transduction histidine kinase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M917_GEODF
chemotaxis protein CheA
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_28
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27290..27661)
DNA (372bp) protein (124aa)
Response regulator receiver protein bin=GWC2_Pelobacter_58_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
chemotaxis protein CheY
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_29
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27680..28951)
DNA (1272bp) protein (424aa)
GAF domain protein bin=GWC2_Pelobacter_58_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
diguanylate cyclase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_35953_30
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29076..30386)
DNA (1311bp) protein (437aa)
GTPase Der bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
GTP-binding protein Der
Tax=BJP_IG2157_Desulfuromonadales_56_134
Displaying items 1-30 of 183 in total

View Taxonomy