ggKbase home page

07V140M03_2016_Ig8141_scaffold_26338

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07V140M03_2016_Ig8141_scaffold_26338_1
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95..799
DNA (705bp) protein (235aa)
HNH endonuclease bin=GWF2_OP3_43_52 species=Methanoregula boonei genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
HNH endonuclease
Tax=BJP_IG2157_Desulfuromonadales_56_134
2019_SCN_bioreactor_t3_biofilm_scaffold_26338_trna_1
unknown

Not on your lists

1002..1074
DNA (73bp)
transferRNA Phe
07V140M03_2016_Ig8141_scaffold_26338_2
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

848..1726
DNA (879bp) protein (293aa)
Restriction endonuclease Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YFP0_THIV6
restriction endonuclease
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_3
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1789..2187
DNA (399bp) protein (133aa)
Putative integron gene cassette protein (Fragment) Tax=uncultured bacterium RepID=B0BIJ2_9BACT
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_4
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2350..3051
DNA (702bp) protein (234aa)
Putative uncharacterized protein bin=GWF1_Spirochaetes_51_8 species=unknown genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_5
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3122..4717)
DNA (1596bp) protein (532aa)
acetyl-CoA hydrolase (EC:3.1.2.1)
Acetyl-CoA hydrolase bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_6
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4960..5697)
DNA (738bp) protein (246aa)
hypothetical protein
Outer membrane protein assembly lipoprotein YfiO, putative bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_7
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5747..6175)
DNA (429bp) protein (143aa)
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_8
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6217..6780)
DNA (564bp) protein (188aa)
Putative manganese efflux pump MntP Tax=Geobacter sp. (strain M21) RepID=MNTP_GEOSM
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_9
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6977..8026
DNA (1050bp) protein (350aa)
Putative permease Tax=Hydrocarboniphaga effusa AP103 RepID=I8I1N3_9GAMM
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_10
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8078..8926
DNA (849bp) protein (283aa)
peptide ABC transporter permease
Binding-protein-dependent transport systems inner membrane component bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_11
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8936..9358
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A3F0_PELCD
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_12
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9362..10183
DNA (822bp) protein (274aa)
Formamidopyrimidine-DNA glycosylase Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=FPG_PELCD
mutM; formamidopyrimidine-DNA glycosylase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_13
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10242..10790)
DNA (549bp) protein (183aa)
2-oxoglutarate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit gamma Tax=Geopsychrobacter electrodiphilus RepID=UPI00036B7A3F
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_14
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10812..11630)
DNA (819bp) protein (273aa)
2-oxoacid:ferredoxin oxidoreductase subunit beta
2-oxoglutarate:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_15
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11632..12771)
DNA (1140bp) protein (380aa)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha (EC:1.2.7.3)
2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_16
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12792..12974)
DNA (183bp) protein (61aa)
2-oxoglutarate:ferredoxin oxidoreductase, ferredoxin subunit Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A5S6_PELCD
korD; 2-oxoglutarate:ferredoxin oxidoreductase, ferredoxin subunit
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_17
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13179..14147)
DNA (969bp) protein (323aa)
malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase bin=GWC2_Pelobacter_58_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_18
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14225..16456)
DNA (2232bp) protein (744aa)
Isocitrate dehydrogenase, NADP-dependent Tax=Geobacter sulfurreducens RepID=D7AIQ0_GEOSK
icd; isocitrate dehydrogenase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_19
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16625..17092)
DNA (468bp) protein (156aa)
LysM domain lipoprotein Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A5R8_PELCD
lysM domain-containing protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_20
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17159..18946)
DNA (1788bp) protein (596aa)
Aspartate--tRNA ligase bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
aspS; aspartyl-tRNA synthetase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_21
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19027..20271)
DNA (1245bp) protein (415aa)
Histidine--tRNA ligase Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=SYH_PELCD
hisS; histidyl-tRNA ligase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_22
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20405..21784)
DNA (1380bp) protein (460aa)
Response receiver-modulated diguanylate cyclase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
response receiver-modulated diguanylate cyclase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_23
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21781..24201)
DNA (2421bp) protein (807aa)
Competence protein, ComEC-related, putative bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_24
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24569..27100
DNA (2532bp) protein (844aa)
Aconitate hydratase 2 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M1C5_GEODF
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_25
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27254..28267
DNA (1014bp) protein (338aa)
Tetratricopeptide TPR_1 repeat-containing protein bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_26
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28274..29092
DNA (819bp) protein (273aa)
Hydrolase or acyltransferase, alpha/beta fold family bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
alpha/beta fold family hydrolase
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_27
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29156..29470
DNA (315bp) protein (105aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI000366BD31
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_28
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29559..30794)
DNA (1236bp) protein (412aa)
Helix-turn-helix transcriptional regulator, LuxR family bin=GWC2_Pelobacter_58_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
LuxR family transcriptional regulator
Tax=BJP_IG2157_Desulfuromonadales_56_134
07V140M03_2016_Ig8141_scaffold_26338_29
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31047..32816
DNA (1770bp) protein (590aa)
Probable cell surface glycoprotein Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1Y5H9_NATM8
probable cell surface glycoprotein
Tax=BJP_IG2157_Desulfuromonadales_56_134
Displaying items 1-30 of 121 in total

View Taxonomy