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07M_4_2014_scaffold_478

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_478_1
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(633..5312)
DNA (4680bp) protein (1560aa)
Fibronectin type III domain protein (Fragment) id=4110200 bin=GWF2_Melioribacter_38_21 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria rbh
outer membrane adhesin-like protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_2
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6429..8246
DNA (1818bp) protein (606aa)
Transcriptional regulator id=4204044 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
AraC family transcriptional regulator
Tax=GWF2_Bacteroidetes_38_335_curated
07M_4_2014_scaffold_478_3
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(8431..14031)
DNA (5601bp) protein (1867aa)
Uncharacterized protein id=3439062 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
hypothetical protein rbh
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_4
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(14043..15008)
DNA (966bp) protein (322aa)
Uncharacterized protein id=3439063 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
hypothetical protein rbh
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_5
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(15496..15717)
DNA (222bp) protein (74aa)
YcfA family protein n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F110_SPICH
YcfA family protein
Tax=CG_Anaero_04
07M_4_2014_scaffold_478_6
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(15714..15920)
DNA (207bp) protein (69aa)
Uncharacterized protein family UPF0150 id=14426146 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin1_lowGC organism_group=Unknown_CP
Uncharacterized protein family UPF0150
Tax=RBG_16_Ignavibacteria_35_7_curated
07M_4_2014_scaffold_478_7
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

16322..16888
DNA (567bp) protein (189aa)
Uncharacterized protein id=4009858 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
hypothetical protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_8
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

16891..18360
DNA (1470bp) protein (490aa)
RNA polymerase, sigma 54 subunit, RpoN id=4009859 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
RNA polymerase, sigma 54 subunit, RpoN
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_9
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

18357..18989
DNA (633bp) protein (211aa)
Uncharacterized protein id=4009860 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
hypothetical protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_10
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

19185..19721
DNA (537bp) protein (179aa)
ATP-dependent protease subunit HslV id=4009861 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
ATP-dependent HslUV protease peptidase subunit
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_11
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

19718..21100
DNA (1383bp) protein (461aa)
ATP-dependent protease ATPase subunit HslU id=4667299 bin=GWF2_Melioribacter_38_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria rbh
ATP-dependent HslUV protease ATP-binding subunit
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_12
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

21335..21979
DNA (645bp) protein (215aa)
Class B acid phosphatase id=4009867 bin=GWC2_Ignavibacteria_38_9 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
Class B acid phosphatase
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_13
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

22193..23062
DNA (870bp) protein (290aa)
Gluconolactonase id=4009869 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
gluconolactonase
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_14
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

23075..23524
DNA (450bp) protein (150aa)
Cupin 2 conserved barrel domain protein id=4009871 bin=GWC2_Ignavibacteria_38_9 species=Methylobacterium nodulans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
cupin
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_15
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

23527..24504
DNA (978bp) protein (326aa)
Oxidoreductase id=4009873 bin=GWC2_Ignavibacteria_38_9 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
oxidoreductase
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_16
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

24553..25050
DNA (498bp) protein (166aa)
Rubrerythrin id=4009875 bin=GWC2_Ignavibacteria_38_9 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
rubrerythrin
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_17
unknown

Not on your lists

25236..25388
DNA (153bp) protein (51aa)

This feature has no annotations

07M_4_2014_scaffold_478_18
BJP_IG2102_Ignavibacteriales_35_8, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(25398..26561)
DNA (1164bp) protein (388aa)
PHP domain-containing protein id=4975206 bin=GWA2_Bacteroidetes_42_15 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes rbh
histidinol phosphatase
Tax=BJP_IG2102_Ignavibacteriales_35_8
07M_4_2014_scaffold_478_19
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

26643..27662
DNA (1020bp) protein (340aa)
3-dehydro-L-gulonate 2-dehydrogenase id=4667310 bin=GWF2_Melioribacter_38_21 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria rbh
3-dehydro-L-gulonate 2-dehydrogenase rbh
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_20
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(27672..28154)
DNA (483bp) protein (161aa)
Putative uncharacterized protein id=2228111 bin=GWB2_Ignavibacteria_35_12 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
07M_4_2014_scaffold_478_21
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28147..28977)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B79413 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHJ38610.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
07M_4_2014_scaffold_478_22
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists


29033..31654
DNA (2622bp) protein (874aa)
Valine--tRNA ligase id=4667313 bin=GWF2_Melioribacter_38_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria rbh
valyl-tRNA synthetase rbh
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_23
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

31740..33038
DNA (1299bp) protein (433aa)
Protein serine/threonine phosphatase with GAF(S) sensor(S) id=3801114 bin=GWC2_Ignavibacteria_38_9 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
serine phosphatase
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
07M_4_2014_scaffold_478_24
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

33041..33994
DNA (954bp) protein (318aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit id=3801112 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria rbh
pyridoxal-5'-phosphate-dependent protein beta subunit
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
Displaying 24 items

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