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07M_4_2014_scaffold_2525

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_2525_1
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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1..1122
DNA (1122bp) protein (374aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4502686 bin=GWC2_OP3_44_8 species=Caldicellulosiruptor saccharolyticus genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_2
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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1116..1916
DNA (801bp) protein (267aa)
RlpA-like lipoprotein id=4039394 bin=GWF2_OP3_43_52 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tol-pal system protein YbgF
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_3
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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1907..2845
DNA (939bp) protein (313aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase id=4039398 bin=GWF2_OP3_43_52 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8 rbh
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_4
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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2818..4077
DNA (1260bp) protein (420aa)
GTPase HflX id=4502695 bin=GWC2_OP3_44_8 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
GTP-binding proten HflX
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_5
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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4166..4429
DNA (264bp) protein (88aa)
Transcriptional regulator, MerR family id=4039412 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
MerR family transcriptional regulator
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_6
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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4606..5100
DNA (495bp) protein (165aa)
Heat-inducible transcription repressor hrcA id=2229581 bin=GWB2_CP_45_9 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
heat-inducible transcription repressor HrcA
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_7
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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5109..5645
DNA (537bp) protein (179aa)
Protein GrpE id=2229579 bin=GWB2_CP_45_9 species=Desulfitobacterium hafniense genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
molecular chaperone GrpE
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_8
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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5725..7614
DNA (1890bp) protein (630aa)
Chaperone protein DnaK id=4039427 bin=GWF2_OP3_43_52 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
chaperone protein DnaK
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_9
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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7743..8903
DNA (1161bp) protein (387aa)
Chaperone protein DnaJ id=4039428 bin=GWF2_OP3_43_52 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
molecular chaperone DnaJ
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_10
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

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8915..9184
DNA (270bp) protein (90aa)
type I antifreeze protein id=4039429 bin=GWF2_OP3_43_52 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
type I antifreeze protein
Tax=GWF2_WOR_2_43_52_curated
07M_4_2014_scaffold_2525_11
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

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9181..10461
DNA (1281bp) protein (427aa)
Uncharacterized protein id=1812867 bin=GWA2_OP3_53_43 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_2525_12
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

10469..11308
DNA (840bp) protein (280aa)
acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta id=1703691 bin=GWB2_CP_45_9 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_13
R_WOR_2_41_12, WOR-2, Bacteria

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11389..12297
DNA (909bp) protein (303aa)
Sugar ABC transporter, ATP-binding protein id=4039433 bin=GWF2_OP3_43_52 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
ABC transporter-like protein
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_2525_14
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

12266..13609
DNA (1344bp) protein (448aa)
Diguanylate cyclase (GGDEF) domain-containing protein id=4225790 bin=GWF2_OP3_43_52 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
diguanylate cyclase domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_2525_15
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

13613..14608
DNA (996bp) protein (332aa)
Diguanylate cyclase with GAF sensor id=4225791 bin=GWF2_OP3_43_52 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
diguanylate cyclase
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_2525_16
RLO_WOR_2_51_8, WOR-2, Bacteria

Not on your lists

14659..15582
DNA (924bp) protein (308aa)
Glucokinase id=1703687 bin=GWB2_CP_45_9 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3 rbh
ROK family glucokinase
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_8_curated
07M_4_2014_scaffold_2525_17
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

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15585..16229
DNA (645bp) protein (215aa)
Probable transaldolase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z724_MELRP
transaldolase
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_2525_18
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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16204..18393
DNA (2190bp) protein (730aa)
Organic solvent tolerance protein id=4039437 bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
imp; organic solvent tolerance protein OstA
Tax=RBG_13_WOR_2_41_10_curated
07M_4_2014_scaffold_2525_19
CG_Omnitr_03, Omnitrophica, Bacteria

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18397..19722
DNA (1326bp) protein (442aa)
Nucleotide sugar dehydrogenase id=1812856 bin=GWA2_OP3_53_43 species=Thermoanaerobacter ethanolicus genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
lipopolysaccharide biosynthesis protein
Tax=CG_Omnitr_03
07M_4_2014_scaffold_2525_20
R_WOR_2_45_21, WOR-2, Bacteria

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19753..20151
DNA (399bp) protein (133aa)
Pilin, type IV, putative id=4171177 bin=GWC2_OP3-like_45_7 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
pilin V
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
07M_4_2014_scaffold_2525_21
R_WOR_2_45_21, WOR-2, Bacteria

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20568..20957
DNA (390bp) protein (130aa)
Pilin, type IV, putative id=4171177 bin=GWC2_OP3-like_45_7 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
pilin, type IV
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Displaying 21 items

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