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07M_4_2014_scaffold_392

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_392_1
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

comp(75..287)
DNA (213bp) protein (71aa)
Putative RNA-binding protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2JBC4_9CLOT
putative RNA-binding protein
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_2
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

comp(284..1789)
DNA (1506bp) protein (502aa)
Membrane protein insertase YidC id=4202635 bin=GWF2_OP3_43_52 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_3
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists


comp(2016..2153)
DNA (138bp) protein (46aa)
50S ribosomal protein L34 n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PT81_PSEUV
50S ribosomal protein L34
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_392_4
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

2396..3763
DNA (1368bp) protein (456aa)
Chromosomal replication initiator protein DnaA id=4202470 bin=GWF2_OP3_43_52 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
dnaA; chromosomal replication initiation protein
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_5
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

3904..4995
DNA (1092bp) protein (364aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta id=4202468 bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_6
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

4998..5282
DNA (285bp) protein (95aa)
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_392_7
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

5279..9028
DNA (3750bp) protein (1250aa)
DNA gyrase subunit B id=4424975 bin=GWC2_OP3_44_8 species=Rivularia sp. PCC 7116 genus=Rivularia taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
DNA gyrase subunit B
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_8
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists


9030..11459
DNA (2430bp) protein (810aa)
DNA gyrase subunit A id=4202463 bin=GWF2_OP3_43_52 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
DNA gyrase subunit A
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
07M_4_2014_scaffold_392_trna_1
unknown

Not on your lists

11794..11868
DNA (75bp)
transferRNA Glu
07M_4_2014_scaffold_392_9
R_WOR_2_46_37, WOR-2, Bacteria

Not on your lists

12215..14110
DNA (1896bp) protein (632aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=4424979 bin=GWC2_OP3_44_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52 rbh
glutamine--fructose-6-phosphate transaminase
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_46_37_curated
07M_4_2014_scaffold_392_10
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

14131..14556
DNA (426bp) protein (142aa)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L4V8_9BACT
16S rRNA methyltransferase
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_392_11
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

14680..17625
DNA (2946bp) protein (982aa)
Putative uncharacterized protein id=3647554 bin=GWC2_OP3_44_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52 rbh
hypothetical protein
Tax=GWF2_WOR_2_43_52_curated
07M_4_2014_scaffold_392_12
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

17978..18517
DNA (540bp) protein (180aa)
bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4424980 bin=GWC2_OP3_44_8 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_392_13
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

18522..19466
DNA (945bp) protein (315aa)
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase id=4202455 bin=GWF2_OP3_43_52 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_392_14
RIFOXYC2_FULL_WOR_2_45_15_curated, WOR-2, Bacteria

Not on your lists

19450..20727
DNA (1278bp) protein (426aa)
dihydroorotase (EC:3.5.2.3) rbh
Dihydroorotase id=4202426 bin=GWF2_OP3_43_52 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=RIFOXYC2_FULL_WOR_2_45_15_curated
07M_4_2014_scaffold_392_15
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

20858..21172
DNA (315bp) protein (105aa)
Uncharacterized protein id=4424983 bin=GWC2_OP3_44_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_392_16
RLO_WOR_2_51_8, WOR-2, Bacteria

Not on your lists

21174..22433
DNA (1260bp) protein (420aa)
PHP domain protein id=4202424 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
PHP domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_8_curated
07M_4_2014_scaffold_392_trna_2
unknown

Not on your lists

22491..22574
DNA (84bp)
transferRNA Leu
07M_4_2014_scaffold_392_17
Thermoanaerobacter italicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22667..23575)
DNA (909bp) protein (303aa)
type II site-specific deoxyribonuclease (EC:3.1.21.4)
Type II site-specific deoxyribonuclease {ECO:0000313|EMBL:ADD01793.1}; EC=3.1.21.4 {ECO:0000313|EMBL:ADD01793.1};; TaxID=580331 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter italicus (strain DSM 9252 / Ab9).;"
Type II site-specific deoxyribonuclease n=1 Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T761_THEIA
07M_4_2014_scaffold_392_18
RBG_13_OP3X_46_9_curated, OP3X, Bacteria

Not on your lists

comp(23577..24455)
DNA (879bp) protein (293aa)
DNA methylase N-4/N-6 domain-containing protein id=4035141 bin=GWC2_Deltaproteobacteria_42_51 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
DNA methylase N-4
Tax=RBG_13_OP3X_46_9_curated
07M_4_2014_scaffold_392_19
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

comp(25114..26043)
DNA (930bp) protein (310aa)
Response regulator receiver modulated diguanylate cyclase id=4202903 bin=GWF2_OP3_43_52 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
response regulator receiver modulated diguanylate cyclase
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_20
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

comp(26033..27550)
DNA (1518bp) protein (506aa)
Multi-sensor hybrid histidine kinase id=4788811 bin=GWA2_OP3_53_43 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
sensory box histidine kinase
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_392_21
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

comp(27553..28776)
DNA (1224bp) protein (408aa)
Multi-sensor hybrid histidine kinase id=4202907 bin=GWF2_OP3_43_52 species=Flavobacteria bacterium BAL38 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_trna_3
unknown

Not on your lists

28871..28945
DNA (75bp)
transferRNA Glu
07M_4_2014_scaffold_392_22
GWB2_WOR_2_45_9_curated, WOR-2, Bacteria

Not on your lists

29296..30462
DNA (1167bp) protein (389aa)
ATPase, AAA family id=2099108 bin=GWB2_CP_45_9 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
ATPase AAA family
Tax=GWB2_WOR_2_45_9_curated
07M_4_2014_scaffold_392_23
R_WOR_2_50_17, WOR-2, Bacteria

Not on your lists

30940..32862
DNA (1923bp) protein (641aa)
Putative uncharacterized protein id=4568837 bin=GWF2_OP3_38_59 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_50_17_curated
07M_4_2014_scaffold_392_24
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

32934..33881
DNA (948bp) protein (316aa)
PpiC-type peptidyl-prolyl cis-trans isomerase id=1700355 bin=GWB2_CP_45_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_25
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

33882..34826
DNA (945bp) protein (315aa)
Flp pilus assembly protein CpaB id=4202912 bin=GWF2_OP3_43_52 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Flp pilus assembly protein CpaB
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
07M_4_2014_scaffold_392_26
R_WOR_2_45_21, WOR-2, Bacteria

Not on your lists

34834..36459
DNA (1626bp) protein (542aa)
Type II and III secretion system protein id=4202914 bin=GWF2_OP3_43_52 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
07M_4_2014_scaffold_392_27
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

36464..38620
DNA (2157bp) protein (719aa)
Putative pilus assembly-related protein id=4194804 bin=GWC2_OP3_44_8 species=Bdellovibrio exovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
tadA; Flp pilus assembly protein TadA
Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
Displaying items 1-30 of 34 in total

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