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07M_4_2014_scaffold_3753

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_3753_1
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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24..713
DNA (690bp) protein (230aa)
proteasome subunit alpha (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KT29_ARCVS
Tax=RBG_16_Micrarchaeota_49_10_curated
07M_4_2014_scaffold_3753_2
Thermococcus paralvinellae, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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727..1464
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LHQ4_THEBM
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF79650.1}; TaxID=582419 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus paralvinellae.;"
07M_4_2014_scaffold_3753_3

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1527..2579
DNA (1053bp) protein (351aa)
exosome complex RNA-binding protein Rrp4; K03679 exosome complex component RRP4 id=5044445 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
putative exosome complex RNA-binding protein 1
07M_4_2014_scaffold_3753_4
Thermococcus sp. 4557, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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2615..3343
DNA (729bp) protein (243aa)
Exosome complex component Rrp41 {ECO:0000256|HAMAP-Rule:MF_00591}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00591};; TaxID=1042877 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sp. (strain CGMCC 1.5172 / 4557).;"
Exosome complex component Rrp41 n=1 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HIZ4_THES4
exosome complex exonuclease Rrp41
07M_4_2014_scaffold_3753_5
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3337..4125
DNA (789bp) protein (263aa)
Exosome complex component Rrp42 n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L0Z0_METHD
Exosome complex component Rrp42 {ECO:0000256|HAMAP-Rule:MF_00622}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens MM1.;"
RNase PH-related exoribonuclease
07M_4_2014_scaffold_3753_6
Methanothermococcus okinawensis, Methanothermococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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4243..4527
DNA (285bp) protein (95aa)
50S ribosomal protein L37 n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI000367F8DB
50S ribosomal protein L37
50S ribosomal protein L37Ae {ECO:0000256|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000256|HAMAP-Rule:MF_00327}; TaxID=647113 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus.;" source="Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1).;"
07M_4_2014_scaffold_3753_7
unknown

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4728..4946
DNA (219bp) protein (73aa)

This feature has no annotations

07M_4_2014_scaffold_3753_8
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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4999..5340
DNA (342bp) protein (114aa)
Prefoldin subunit beta n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BDE2_METIK
prefoldin subunit beta
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5).;"
07M_4_2014_scaffold_3753_9
unknown

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5382..5744
DNA (363bp) protein (121aa)

This feature has no annotations

07M_4_2014_scaffold_3753_10
unknown

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5910..6152
DNA (243bp) protein (81aa)

This feature has no annotations

07M_4_2014_scaffold_3753_11
Thermococcus sp. AM4, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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6267..7484
DNA (1218bp) protein (406aa)
Phosphoesterase recJ-like containing a DHHA1 domain n=1 Tax=Thermococcus sp. AM4 RepID=B7R1G0_9EURY
phosphoesterase recJ-like containing a DHHA1 domain
Phosphoesterase recJ-like containing a DHHA1 domain {ECO:0000313|EMBL:EEB74475.1}; TaxID=246969 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sp. AM4.;"
Displaying 11 items

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