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07M_4_2014_scaffold_325

Search features with annotation key words

Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_325_1
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2..394)
DNA (393bp) protein (131aa)
membrane-flanked domain protein; K08981 putative membrane protein id=74772 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
07M_4_2014_scaffold_325_trna_4
unknown

Not on your lists

comp(520..592)
DNA (73bp)
transferRNA Arg
07M_4_2014_scaffold_325_2
GWA2_OD1_38_27, Parcubacteria, Bacteria

Not on your lists

775..1707
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000368A3EC
Protease Do {ECO:0000313|EMBL:KKQ67565.1}; TaxID=1618812 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_38_27.;"
Trypsin
07M_4_2014_scaffold_325_3
unknown

Not on your lists

comp(1676..1834)
DNA (159bp) protein (53aa)

This feature has no annotations

07M_4_2014_scaffold_325_trna_3
unknown

Not on your lists

comp(1777..1848)
DNA (72bp)
transferRNA His
07M_4_2014_scaffold_325_4
RBG_16_OP11_Woesebacteria_36_11_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(1910..3016)
DNA (1107bp) protein (369aa)
tRNA-guanine transglycosylase, various specificities (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] id=6770 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11 rbh
hypothetical protein
Tax=RBG_16_OP11_Woesebacteria_36_11_curated
07M_4_2014_scaffold_325_5
unknown

Not on your lists

comp(3159..3644)
DNA (486bp) protein (162aa)

This feature has no annotations

07M_4_2014_scaffold_325_trna_2
unknown

Not on your lists

comp(3777..3848)
DNA (72bp)
transferRNA Arg
07M_4_2014_scaffold_325_6
RHI_RIF_OD1_06_38_11, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(3878..4219)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035CD86D
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_06_38_11_curated
07M_4_2014_scaffold_325_7

Not on your lists

comp(4219..4779)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036F51FA
Marine sediment metagenome DNA, contig: S06H3_C00841 {ECO:0000313|EMBL:GAH90126.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
07M_4_2014_scaffold_325_8

Not on your lists

comp(4797..5348)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035CB06A
Marine sediment metagenome DNA, contig: S06H3_C00841 {ECO:0000313|EMBL:GAH90128.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
07M_4_2014_scaffold_325_9
GWA2_OD1_38_27, Parcubacteria, Bacteria

Not on your lists

comp(5345..6499)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003795D65
Cell division protein FtsA {ECO:0000313|EMBL:KKQ67560.1}; TaxID=1618812 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_38_27.;"
type IV pilus assembly protein PilM
07M_4_2014_scaffold_325_10
CG_CPR03_01, CG_CPR03, Bacteria

Not on your lists

comp(6519..7904)
DNA (1386bp) protein (462aa)
seg id=5801836 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
Tax=CG_CPR03_01
07M_4_2014_scaffold_325_11

Not on your lists

comp(7901..8746)
DNA (846bp) protein (282aa)
Marine sediment metagenome DNA, contig: S06H3_S19146 {ECO:0000313|EMBL:GAI52666.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=15188901 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
hypothetical protein
07M_4_2014_scaffold_325_12

Not on your lists

comp(8743..9174)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1WYC0_9BACT
Marine sediment metagenome DNA, contig: S06H3_L00991 {ECO:0000313|EMBL:GAI16438.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
07M_4_2014_scaffold_325_13

Not on your lists

comp(9176..9637)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00036BFA75
Marine sediment metagenome DNA, contig: S06H3_L00991 {ECO:0000313|EMBL:GAI16436.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
07M_4_2014_scaffold_325_14
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(9662..10882)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037114F0
Type II secretion system protein
Tax=RBG_13_RIF_OD1_07_37_56_curated
07M_4_2014_scaffold_325_15
R_RIF_OD1_06_33_9, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

10958..11584
DNA (627bp) protein (209aa)
Holliday junction ATP-dependent DNA helicase RuvA id=2966059 bin=GWA1_ZB2_49_26 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
ruvA; Holliday junction DNA helicase RuvA
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_33_9_curated
07M_4_2014_scaffold_325_16

Not on your lists

11606..12673
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000366C2F5
Ammonium transporter protein {ECO:0000313|EMBL:KKQ97112.1}; TaxID=1618921 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_39_11.;"
07M_4_2014_scaffold_325_17
CG_CPR10_03, CG_CPR10, Bacteria

Not on your lists

12670..13908
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036CFC48
UDP-N-acetylmuramyl tripeptide synthetase
Tax=CG_CPR10_03
07M_4_2014_scaffold_325_18
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

13905..14309
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000373446C
Putative archease family protein contains SHS2 domain
Tax=RBG_13_RIF_OD1_07_42_11_curated
07M_4_2014_scaffold_325_19
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

14406..15662
DNA (1257bp) protein (419aa)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase id=1853998 bin=GWB2_Nitrospirae_rel_47_37 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_13_WOR-2_44_8b_curated
07M_4_2014_scaffold_325_20
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

15740..17185
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037ECEB1 rbh
hypothetical protein
Tax=RBG_13_RIF_OD1_07_42_11_curated
07M_4_2014_scaffold_325_21
GWA1_OD1_36_12, Parcubacteria, Bacteria

Not on your lists

17251..17940
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B7K0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP93823.1}; TaxID=1618782 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
07M_4_2014_scaffold_325_22
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

18105..18368
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003799A38
Tax=RBG_13_RIF_OD1_07_36_15_curated
07M_4_2014_scaffold_325_23
R_RIF_OD1_07_41_9, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

18412..19332
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036267ED
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_41_9_curated
07M_4_2014_scaffold_325_24
R_OD1_48_14, Parcubacteria, Bacteria

Not on your lists

19333..20265
DNA (933bp) protein (311aa)
membrane protein id=96376 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
peptidase PrsW
Tax=RIFCSPLOWO2_01_FULL_OD1_48_14_curated
07M_4_2014_scaffold_325_25
unknown

Not on your lists

20262..20390
DNA (129bp) protein (43aa)

This feature has no annotations

07M_4_2014_scaffold_325_trna_1
unknown

Not on your lists

20381..20452
DNA (72bp)
transferRNA Arg
07M_4_2014_scaffold_325_26

Not on your lists


20550..21878
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003693DFD
Uncharacterized protein {ECO:0000313|EMBL:KKN97057.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycyl-tRNA synthetase
Displaying items 1-30 of 41 in total

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