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07M_4_2014_scaffold_1009

Search features with annotation key words

Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_1009_1
R_RIF_OD1_06_33_9, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


1..588
DNA (588bp) protein (196aa)
50S ribosomal protein L4 n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RL4_SYMTH
rplD; 50S ribosomal protein L4
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_33_9_curated
07M_4_2014_scaffold_1009_2
RBG_13_RIF_OD1_07_38_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


700..1125
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000376BEC7
50S ribosomal protein L25/L23
Tax=RBG_13_RIF_OD1_07_38_11_curated
07M_4_2014_scaffold_1009_3
CG_CPR03_01, CG_CPR03, Bacteria

Not on your lists


1130..1930
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000361B17E
rplB; LSU ribosomal protein L2p (L8e)
Tax=CG_CPR03_01
07M_4_2014_scaffold_1009_4
R_RIF_OD1_06_34_10, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


1935..2240
DNA (306bp) protein (102aa)
30S ribosomal protein S19 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZF6_9BACT
30S ribosomal protein S19
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_34_10_curated
07M_4_2014_scaffold_1009_5
CG_CPR03_03, CG_CPR03, Bacteria

Not on your lists


2250..2759
DNA (510bp) protein (170aa)
50S ribosomal protein L22 n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003631AAB
50S ribosomal protein L22
Tax=CG_CPR03_03
07M_4_2014_scaffold_1009_6
CG_CPR03_02, CG_CPR03, Bacteria

Not on your lists


2771..3436
DNA (666bp) protein (222aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQ65_9ZZZZ
30S ribosomal protein S3
Tax=CG_CPR03_02
07M_4_2014_scaffold_1009_7
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


3467..3874
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00038230D1
50S ribosomal protein L16
Tax=RBG_13_RIF_OD1_07_36_15_curated
07M_4_2014_scaffold_1009_8
RIFOXYB1_FULL_RIF_OD1_07_40_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

3940..4098
DNA (159bp) protein (53aa)
Tax=RIFOXYB1_FULL_RIF_OD1_07_40_15_curated
07M_4_2014_scaffold_1009_9
RHI_RIF_OD1_06_38_11, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


4106..4363
DNA (258bp) protein (86aa)
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=99522 bin=ACD66 species=ACD66 genus=ACD66 taxon_order=ACD66 taxon_class=ACD66 phylum=OD1 tax=ACD66 organism_group=OD1 (Parcubacteria) organism_desc=OD1
30S ribosomal protein S17
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_06_38_11_curated
07M_4_2014_scaffold_1009_10

Not on your lists


4383..4733
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN93595.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L14 id=3423284 bin=GWA1_ZB2_49_26 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
50S ribosomal protein L14
07M_4_2014_scaffold_1009_11
R_RIF_OD1_06_34_9, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


4800..5105
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036D7C7C
50S ribosomal protein L24
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_34_9_curated
07M_4_2014_scaffold_1009_12
CG_CPR03_03, CG_CPR03, Bacteria

Not on your lists


5129..5716
DNA (588bp) protein (196aa)
50S ribosomal protein L5 n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000375014D
50S ribosomal protein L5
Tax=CG_CPR03_03
07M_4_2014_scaffold_1009_13
CG_CPR03_01, CG_CPR03, Bacteria

Not on your lists


5932..6321
DNA (390bp) protein (130aa)
30S ribosomal protein S8 n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037C1A94
rpsH; 30S ribosomal protein S8
Tax=CG_CPR03_01
07M_4_2014_scaffold_1009_14
CG_CPR03_01, CG_CPR03, Bacteria

Not on your lists


6326..6865
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371A5D4
50S ribosomal protein L6
Tax=CG_CPR03_01
07M_4_2014_scaffold_1009_15
GWC1_OD1_38_6, Parcubacteria, Bacteria

Not on your lists


6875..7255
DNA (381bp) protein (127aa)
50S ribosomal protein L18, partial n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037F56E2
50S ribosomal protein L18, large subunit ribosomal protein L18 {ECO:0000313|EMBL:KKQ77315.1}; TaxID=1618898 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_38_6.;"
50S ribosomal protein L18
07M_4_2014_scaffold_1009_16
CG_CPR03_01, CG_CPR03, Bacteria

Not on your lists


7224..7814
DNA (591bp) protein (197aa)
30S ribosomal protein S5 n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036AF467
rpsE; 30S ribosomal subunit protein S5
Tax=CG_CPR03_01
07M_4_2014_scaffold_1009_17
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


7816..8247
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003794552
Tax=RBG_13_RIF_OD1_07_36_15_curated
07M_4_2014_scaffold_1009_18
CG_CPR03_02, CG_CPR03, Bacteria

Not on your lists


8271..9575
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037FAA52
preprotein translocase subunit SecY
Tax=CG_CPR03_02
07M_4_2014_scaffold_1009_19
CG_CPR01_01, CG_CPR01, Bacteria

Not on your lists

9671..10330
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037E11B9
adk; adenylate kinase
Tax=CG_CPR01_01
07M_4_2014_scaffold_1009_20
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

10345..10920
DNA (576bp) protein (192aa)
hypothetical protein id=120279 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
07M_4_2014_scaffold_1009_21
CG_CPR10_03, CG_CPR10, Bacteria

Not on your lists

10968..11729
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FAEFA
methionine aminopeptidase
Tax=CG_CPR10_03
07M_4_2014_scaffold_1009_22
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12183..12581)
DNA (399bp) protein (133aa)
Cell-cycle regulation histidine triad HIT protein {ECO:0000313|EMBL:KGD85788.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
HIT family hydrolase, diadenosine tetraphosphate hydrolase id=1708781 bin=GWB2_Clostridiales_37_7 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
histidine triad (HIT) protein
07M_4_2014_scaffold_1009_23
unknown

Not on your lists

comp(12808..13539)
DNA (732bp) protein (244aa)

This feature has no annotations

07M_4_2014_scaffold_1009_24
unknown

Not on your lists

comp(13569..14915)
DNA (1347bp) protein (449aa)

This feature has no annotations

07M_4_2014_scaffold_1009_25
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

14985..15263
DNA (279bp) protein (93aa)
Transposase n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9T568_9CYAN
transposase
Transposase {ECO:0000313|EMBL:AFY78042.1}; TaxID=118163 species="Bacteria; Cyanobacteria; Pleurocapsales; Pleurocapsa.;" source="Pleurocapsa sp. PCC 7327.;"
07M_4_2014_scaffold_1009_26

Not on your lists

15326..16192
DNA (867bp) protein (289aa)
transposase n=1 Tax=Atribacteria bacterium JGI 0000059-I14 RepID=UPI000369C197
Marine sediment metagenome DNA, contig: S01H4_C02255 {ECO:0000313|EMBL:GAG58810.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase IS3 family protein integrase
Displaying 26 items

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