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07M_4_2014_scaffold_733

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Displaying items 1-30 of 47 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_733_1
GWC2_OP11_39_8_plus, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

299..1132
DNA (834bp) protein (278aa)
Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase (EC:3.6.3.4 3.6.3.3)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036E1EC0
Membrane endopeptidase, M50 family {ECO:0000313|EMBL:KKR32778.1}; TaxID=1618450 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWC2_39_8.;"
07M_4_2014_scaffold_733_2
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


1464..2465
DNA (1002bp) protein (334aa)
pheS; phenylalanine--tRNA ligase (EC:6.1.1.20)
Phenylalanyl-tRNA synthetase, alpha subunit id=3423033 bin=GWA1_ZB2_49_26 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_3
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


2467..4545
DNA (2079bp) protein (693aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FB867
phenylalanyl-tRNA synthetase, beta subunit
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
07M_4_2014_scaffold_733_4
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

4808..6826
DNA (2019bp) protein (673aa)
DNA gyrase subunit B (EC:5.99.1.3)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036520EF
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_5
R_SM2F11_43_13, SM2F11, Bacteria

Not on your lists

6873..7160
DNA (288bp) protein (96aa)
id=3544039 bin=GWA1_ZB2_49_26 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_SM2F11_43_13_curated
07M_4_2014_scaffold_733_6

Not on your lists

7247..10444
DNA (3198bp) protein (1066aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000381959E
Polymerase III alpha subunit protein {ECO:0000313|EMBL:KKR03984.1}; TaxID=1618962 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_13b.;"
DNA polymerase III subunit alpha
07M_4_2014_scaffold_733_7
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

10431..12161
DNA (1731bp) protein (577aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036DA2A5
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_8

Not on your lists

12216..13535
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003625A54
Uncharacterized protein {ECO:0000313|EMBL:KKO02876.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
07M_4_2014_scaffold_733_9
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

13631..15484
DNA (1854bp) protein (618aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037FFBA5
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_10
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(15519..17372)
DNA (1854bp) protein (618aa)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AJP0_GEOSK
ftsH-2; cell division ATP-dependent zinc protease FtsH
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
07M_4_2014_scaffold_733_11

Not on your lists

comp(17989..18942)
DNA (954bp) protein (318aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK95421.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
07M_4_2014_scaffold_733_12
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(18890..20404)
DNA (1515bp) protein (505aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036D9163
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_13
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(20471..21121)
DNA (651bp) protein (217aa)
Thymidylate synthase, flavin-dependent id=3163061 bin=GWB1_Spirochaetes_59_5 species=Syntrophobotulus glycolicus genus=Syntrophobotulus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
thymidylate synthase, flavin-dependent
Tax=RBG_13_RIF_OD1_07_42_11_curated
07M_4_2014_scaffold_733_14
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(21165..21776)
DNA (612bp) protein (204aa)
tmk; thymidylate kinase (EC:2.7.4.9)
Probable thymidylate kinase n=2 Tax=Pyrococcus furiosus RepID=KTHY_PYRFU
Tax=RBG_13_RIF_OD1_07_42_11_curated
07M_4_2014_scaffold_733_15
CG_CPR15_01, CG_CPR15, Bacteria

Not on your lists


comp(21788..22210)
DNA (423bp) protein (141aa)
50S ribosomal protein L11 n=1 Tax=uncultured bacterium RepID=K2EZQ6_9BACT
rplK; 50S ribosomal protein L11
Tax=CG_CPR15_01
07M_4_2014_scaffold_733_16
R_OD1_46_26, Microgenomates, Bacteria

Not on your lists

comp(22216..22761)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000380871C
nusG; transcription antitermination factor
Tax=RIFCSPLOWO2_01_FULL_OD1_46_26_curated
07M_4_2014_scaffold_733_17

Not on your lists

comp(22765..22959)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000368D926
Marine sediment metagenome DNA, contig: S06H3_C00798 {ECO:0000313|EMBL:GAI02141.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
preprotein translocase, SecE subunit
07M_4_2014_scaffold_733_18
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

23233..23529
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035F3F5F
rpmF; 50S ribosomal protein L32
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_19
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

23534..24007
DNA (474bp) protein (158aa)
N utilization substance protein B homolog id=4790030 bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
putative transcription termination factor
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
07M_4_2014_scaffold_733_20
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

24133..24831
DNA (699bp) protein (233aa)
RNAse III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] id=8764 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Ribonuclease 3
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_21
unknown

Not on your lists

25178..25666
DNA (489bp) protein (163aa)

This feature has no annotations

07M_4_2014_scaffold_733_22
RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

25774..28044
DNA (2271bp) protein (757aa)
Chromosome segregation protein SMC n=2 Tax=Clostridium butyricum RepID=B1QU33_CLOBU id=2590 bin=ACD11 species=Clostridium butyricum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
chromosome segregation protein SMC
Tax=RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated
07M_4_2014_scaffold_733_23
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


28085..28537
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036D38F0
rpsP; 30S ribosomal protein S16
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_24
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

28655..28978
DNA (324bp) protein (108aa)
UPF0109 protein LDC_0451 id=4790133 bin=GWC2_OD1_43_27 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_25
GWB1_OD1_37_5, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

29228..29968
DNA (741bp) protein (247aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ34404.1}; TaxID=1618742 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_37_5.;"
07M_4_2014_scaffold_733_26
R_RIF_OD1_06_33_13, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

29983..30678
DNA (696bp) protein (232aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_33_13_curated
07M_4_2014_scaffold_733_27
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

30686..31429
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037CD837
tRNA (guanine-N1)-methyltransferase
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_733_28
R_Peregrinibacteria_48_14, Peregrinibacteria, Bacteria

Not on your lists

31486..31740
DNA (255bp) protein (85aa)
Tax=RIFCSPLOWO2_02_FULL_Peregrinibacteria_48_14_curated
07M_4_2014_scaffold_733_29
RBG_19FT_COMBO_OD1_Moranbacteria_42_6_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

31742..32164
DNA (423bp) protein (141aa)
death-on-curing family protein; K07341 death on curing protein id=98458 bin=ACD65 species=ACD65 genus=ACD65 taxon_order=ACD65 taxon_class=ACD65 phylum=PER tax=ACD65 organism_group=PER (Peregrinibacteria) organism_desc=PER
death-on-curing protein
Tax=RBG_19FT_COMBO_OD1_Moranbacteria_42_6_curated
07M_4_2014_scaffold_733_30
R_OD1_Yanofskybacteria_39_10, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

32185..33300
DNA (1116bp) protein (372aa)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_39_10_curated
Displaying items 1-30 of 47 in total

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