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07M_4_2014_scaffold_1545

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_1545_1
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

116..526
DNA (411bp) protein (137aa)
hypothetical protein; K07460 putative endonuclease id=15189931 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_trna_1
unknown

Not on your lists

774..844
DNA (71bp)
transferRNA His
07M_4_2014_scaffold_1545_2
unknown

Not on your lists

788..1180
DNA (393bp) protein (131aa)

This feature has no annotations

07M_4_2014_scaffold_1545_3
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

1283..2293
DNA (1011bp) protein (337aa)
Putative uncharacterized protein id=2720481 bin=GWA1_ZB2_49_26 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good rbh
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_4
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists


comp(2283..3284)
DNA (1002bp) protein (334aa)
recA; recombination protein RecA (EC:3.6.3.8); K03553 recombination protein RecA id=15189691 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
recA; recombinase A (EC:3.6.3.8)
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_5
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3418..4041)
DNA (624bp) protein (208aa)
transmembrane_regions 107..124 id=134008 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_6
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4181..6265)
DNA (2085bp) protein (695aa)
putative cell division FtsK/SpoIIIE id=15189693 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete rbh
cell division protein FtsK
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_7
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

6436..6879
DNA (444bp) protein (148aa)
phosphomannomutase (EC:5.4.2.8) id=15190030 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
phosphomannomutase (EC:5.4.2.8)
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_8
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

6876..8141
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000368B626
UvrD/REP helicase family protein
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
07M_4_2014_scaffold_1545_9
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8138..9397)
DNA (1260bp) protein (420aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=5803710 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylmuramate/alanine ligase
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_10
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

9478..11001
DNA (1524bp) protein (508aa)
metal dependent phosphohydrolase (EC:3.1.4.16); K06950 uncharacterized protein id=15190703 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_11
R_OD1_Jorgensenbacteria_45_20, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

11335..11610
DNA (276bp) protein (92aa)
nucleoid DNA-binding protein id=15190698 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hupB; DNA-binding protein HU-beta
Tax=RIFCSPHIGHO2_02_FULL_OD1_Jorgensenbacteria_45_20_curated
07M_4_2014_scaffold_1545_12
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11803..12741)
DNA (939bp) protein (313aa)
transmembrane_regions 7..29 id=133416 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_13
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12782..13075)
DNA (294bp) protein (98aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_14
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13041..13595)
DNA (555bp) protein (185aa)
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=15190694 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RNA polymerase ECF-type sigma factor
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_trna_3
unknown

Not on your lists

comp(13706..13776)
DNA (71bp)
transferRNA Gly
07M_4_2014_scaffold_1545_15
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

14165..14776
DNA (612bp) protein (204aa)
transmembrane_regions 13..35 id=133609 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_1545_16
CG_Kuenen_03, Kuenenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14768..16201)
DNA (1434bp) protein (478aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase id=3012975 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation rbh
Tax=CG_Kuenen_03
07M_4_2014_scaffold_1545_trna_2
unknown

Not on your lists

comp(16258..16328)
DNA (71bp)
transferRNA Pro
07M_4_2014_scaffold_1545_17
unknown

Not on your lists

comp(16319..16447)
DNA (129bp) protein (43aa)

This feature has no annotations

Displaying 20 items

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