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07M_4_2014_scaffold_3484

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_3484_trna_7
unknown

Not on your lists

comp(2..72)
DNA (71bp)
transferRNA Ala
07M_4_2014_scaffold_3484_1
R_OD1_48_14, Parcubacteria, Bacteria

Not on your lists

comp(403..1080)
DNA (678bp) protein (226aa)
Putative uncharacterized protein id=2820756 bin=GWC2_Geobacteraceae_55_20 species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
type 11 methyltransferase
Tax=RIFCSPLOWO2_01_FULL_OD1_48_14_curated
07M_4_2014_scaffold_3484_trna_6
unknown

Not on your lists

comp(1210..1280)
DNA (71bp)
transferRNA Pro
07M_4_2014_scaffold_3484_2
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1484..2965)
DNA (1482bp) protein (494aa)
bpo:BP951000_0805 polyA polymerase family protein; K00970 poly(A) polymerase [EC:2.7.7.19] id=133485 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1 rbh
polyA polymerase family protein
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_3484_3
unknown

Not on your lists

comp(3108..3521)
DNA (414bp) protein (138aa)

This feature has no annotations

07M_4_2014_scaffold_3484_trna_1
unknown

Not on your lists

3654..3725
DNA (72bp)
transferRNA Arg
07M_4_2014_scaffold_3484_4
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3758..4729)
DNA (972bp) protein (324aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein id=3506657 bin=GWC1_OD1_38_17 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_3484_trna_2
unknown

Not on your lists

4875..4946
DNA (72bp)
transferRNA Lys
07M_4_2014_scaffold_3484_5
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

4952..7123
DNA (2172bp) protein (724aa)
recG; ATP-dependent DNA helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] id=15190612 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete rbh
recG; ATP-dependent DNA helicase
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_3484_6
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists


comp(7132..7803)
DNA (672bp) protein (224aa)
Uncharacterized protein id=1924376 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Phenylalanyl-tRNA synthetase alpha chain
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_3484_trna_3
unknown

Not on your lists

8085..8156
DNA (72bp)
transferRNA Met
07M_4_2014_scaffold_3484_7
R_RIF_OD1_13_53_17, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

8336..9022
DNA (687bp) protein (229aa)
hypothetical protein SghaA1_21382 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF0DCB id=133051 bin=ACD81 species=Streptomyces ghanaensis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_53_17_curated
07M_4_2014_scaffold_3484_trna_4
unknown

Not on your lists

9013..9083
DNA (71bp)
transferRNA Met
07M_4_2014_scaffold_3484_trna_5
unknown

Not on your lists

9133..9207
DNA (75bp)
transferRNA Asp
07M_4_2014_scaffold_3484_8
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9260..9583)
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_3484_9
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9590..10276)
DNA (687bp) protein (229aa)
chy:CHY_1102 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=133863 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4)
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
Displaying 16 items

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