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07M_4_2014_scaffold_1782

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_1782_1
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(1..237)
DNA (237bp) protein (79aa)
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_2
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(266..553)
DNA (288bp) protein (96aa)
hypothetical protein id=15189645 bin=GWE1_Berkelbacteria_39_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_3
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(575..1123)
DNA (549bp) protein (183aa)
Putative uncharacterized protein id=4731754 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_4
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(1136..2518)
DNA (1383bp) protein (461aa)
Putative exonuclease of the beta-lactamase fold involved in RNA processing id=2648841 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
putative exonuclease of the beta-lactamase fold involved in RNA processing
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_5
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(2531..3202)
DNA (672bp) protein (224aa)
Uncharacterized protein id=4095947 bin=GWF2_OP3_43_52 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_6
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3204..3515)
DNA (312bp) protein (104aa)
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_7
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3562..3882)
DNA (321bp) protein (107aa)
id=2130166 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_8
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3882..4568)
DNA (687bp) protein (229aa)
Putative uncharacterized protein id=1897378 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_9
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(4746..5441)
DNA (696bp) protein (232aa)
ppiA; peptidyl-prolyl cis-trans isomerase A (EC:5.2.1.8)
ppiB-2; peptidyl-prolyl isomerase id=3355377 bin=GWC1_CPR2_39_9 species=WS6_CLOSED genus=WS6_CLOSED taxon_order=WS6_CLOSED taxon_class=WS6_CLOSED phylum=WS6 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_10
unknown

Not on your lists

5508..5708
DNA (201bp) protein (67aa)

This feature has no annotations

07M_4_2014_scaffold_1782_11
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(5833..6000)
DNA (168bp) protein (56aa)
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_12
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(5997..7394)
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037ECEB1
hypothetical protein
Tax=RBG_13_RIF_OD1_07_42_11_curated
07M_4_2014_scaffold_1782_13

Not on your lists

comp(7388..8362)
DNA (975bp) protein (325aa)
Retron-type reverse transcriptase {ECO:0000313|EMBL:KKS57992.1}; TaxID=1618823 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_35.;"
RNA-directed DNA polymerase (reverse transcriptase) id=2794 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
RNA-directed DNA polymerase Reverse transcriptase
07M_4_2014_scaffold_1782_14
GWC2_OD1_i_40_12, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

8421..8783
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8Z2_9BACT id=85588 bin=ACD57 species=Diplosphaera colitermitum genus=Diplosphaera taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:KKR44175.1}; TaxID=1618699 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_40_12.;"
hypothetical protein
07M_4_2014_scaffold_1782_15

Not on your lists

comp(9223..10056)
DNA (834bp) protein (278aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT28275.1}; TaxID=1618912 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_44_10.;"
id=5801247 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
07M_4_2014_scaffold_1782_16
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(10181..10594)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000373446C
Putative archease family protein contains SHS2 domain
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1782_17

Not on your lists

comp(10587..11843)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036CFC48
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000313|EMBL:KKS26162.1}; TaxID=1618819 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_11.;"
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
Displaying 17 items

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