ggKbase home page

07M_4_2014_scaffold_1908

Search features with annotation key words

Displaying 11 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_1908_1
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

1..942
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037D32EB
pilB1; type IV-A pilus assembly ATPase PilB
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1908_2
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

1304..2320
DNA (1017bp) protein (339aa)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=uncultured bacterium RepID=K2F3G0_9BACT rbh
Holliday junction DNA helicase RuvB
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1908_3
R_RIF_OD1_08_43_11, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(2460..3098)
DNA (639bp) protein (213aa)
Orotate phosphoribosyltransferase n=1 Tax=uncultured bacterium RepID=K2DE67_9BACT
phosphoribosyltransferase
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_43_11_curated
07M_4_2014_scaffold_1908_4

Not on your lists

comp(3103..3960)
DNA (858bp) protein (286aa)
Dihydroorotate dehydrogenase 1B {ECO:0000313|EMBL:KKQ57781.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
07M_4_2014_scaffold_1908_5
R_RIF_OD1_07_47_27, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(3976..4683)
DNA (708bp) protein (236aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IDL3_9CHLR
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_47_27_curated
07M_4_2014_scaffold_1908_6
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

4992..6530
DNA (1539bp) protein (513aa)
PKD id=3079089 bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1908_7
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

6551..7090
DNA (540bp) protein (180aa)
Probable transcriptional regulatory protein Desti_1416 id=4731905 bin=GWC2_OD1_43_27 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1908_8
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

7087..7560
DNA (474bp) protein (158aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RIK7_HALHG
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1908_9
unknown

Not on your lists

7683..7835
DNA (153bp) protein (51aa)

This feature has no annotations

07M_4_2014_scaffold_1908_10
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

7922..10285
DNA (2364bp) protein (788aa)
Penicillin-binding protein, 1A family id=4731909 bin=GWC2_OD1_43_27 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) rbh
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_1908_11
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(10430..11344)
DNA (915bp) protein (305aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III, beta subunit id=4731910 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tax=RBG_13_RIF_OD1_08_37_53_curated
Displaying 11 items

View Taxonomy