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07M_4_2014_scaffold_811

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_811_1
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3..665)
DNA (663bp) protein (221aa)
DNA internalization-related competence protein ComEC/Rec2 id=2824377 bin=GWC1_OD1_38_17 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
DNA internalization-related competence protein ComEC/Rec2
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_2
unknown

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692..883
DNA (192bp) protein (64aa)

This feature has no annotations

07M_4_2014_scaffold_811_3

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comp(943..1605)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00035DE755
Uncharacterized protein {ECO:0000313|EMBL:KKT26487.1}; TaxID=1618828 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_43_9b.;"
hypothetical protein
07M_4_2014_scaffold_811_4
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(1654..2916)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000365DF08
comEC; DNA internalization competence protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_5
R_SM2F11_43_13, SM2F11, Bacteria

Not on your lists

comp(2967..3773)
DNA (807bp) protein (269aa)
Radical SAM domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LJ47_9FIRM id=130017 bin=ACD7 species=Marvinbryantia formatexigens genus=Marvinbryantia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
Radical SAM domain protein
Tax=RIFCSPHIGHO2_02_FULL_SM2F11_43_13_curated
07M_4_2014_scaffold_811_6
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3770..4477)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2G6B9_9BACT
anaerobic ribonucleoside-triphosphate reductase activating protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
07M_4_2014_scaffold_811_7
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(4487..6586)
DNA (2100bp) protein (700aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035E50E4
anaerobic ribonucleoside-triphosphate reductase rbh
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_8
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(6653..7825)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-G05 RepID=UPI00036F8DA2 rbh
cell division protein FtsZ
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_9
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(7890..9143)
DNA (1254bp) protein (418aa)
Cell division protein ftsA n=1 Tax=uncultured bacterium RepID=K1YT84_9BACT
cell division protein FtsA
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_10
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(9234..9602)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036AD8F4
hypothetical protein
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_11
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(9583..10074)
DNA (492bp) protein (164aa)
GatB/Yqey domain-containing protein; K09117 hypothetical protein id=14424493 bin=bin1_lowGC species=Thermotoga petrophila genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=bin1_lowGC organism_group=Unknown_CP
GatB/Yqey
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_12

Not on your lists

comp(10291..10611)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E0E9A
Marine sediment metagenome DNA, contig: S06H3_S23509 {ECO:0000313|EMBL:GAI56664.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
histidine triad (HIT) protein
07M_4_2014_scaffold_811_13
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


comp(10613..11935)
DNA (1323bp) protein (441aa)
Histidine--tRNA ligase id=2720331 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
histidyl-tRNA synthetase
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_14
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(11980..12543)
DNA (564bp) protein (188aa)
lepB; signal peptidase I (EC:3.4.21.89)
Signal peptidase I id=1899026 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_15
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

12598..13623
DNA (1026bp) protein (342aa)
Cell envelope-related transcriptional attenuator id=2824494 bin=GWC1_OD1_38_17 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
cell envelope-related transcriptional attenuator
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_16
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

13620..14117
DNA (498bp) protein (166aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=uncultured bacterium RepID=K2BYN5_9BACT
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_17
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

14350..15195
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZJP2_9BACT
DNA processing protein DprA
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_18
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

15186..17249
DNA (2064bp) protein (688aa)
DNA topoisomerase I (EC:5.99.1.2)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037E87B7
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_trna_1
unknown

Not on your lists

17387..17470
DNA (84bp)
transferRNA Leu
07M_4_2014_scaffold_811_19
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(17498..18115)
DNA (618bp) protein (206aa)
purN; phosphoribosylformylglycinamidine synthase II (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] id=14624535 bin=bin5_DeltaP species=Smithella sp. ME-1 genus=Smithella taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_20
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(18112..18633)
DNA (522bp) protein (174aa)
Suspect SCG annotation. See neighboring gene [07M_4_2014_scaffold_811_21].
Leucine--tRNA ligase id=1743882 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
leucyl-tRNA synthetase
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_21
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


comp(18594..20321)
DNA (1728bp) protein (576aa)
Leucine--tRNA ligase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AMZ1_IGNAJ
leuS; leucyl-tRNA synthetase
Tax=RBG_13_RIF_OD1_08_37_53_curated
07M_4_2014_scaffold_811_22
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(20329..21072)
DNA (744bp) protein (248aa)
Hydrolase, TatD family id=2824060 bin=GWC1_OD1_38_17 species=Fusobacterium mortiferum genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
TatD family hydrolase
Tax=RBG_13_RIF_OD1_08_37_53_curated
Displaying 23 items

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