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07M_4_2014_scaffold_1176

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_1176_1

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comp(54..1799)
DNA (1746bp) protein (582aa)
Alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=uncultured bacterium RepID=K1YK36_9BACT rbh
Alanine-tRNA ligase {ECO:0000313|EMBL:KKR47712.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
07M_4_2014_scaffold_1176_2
RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated, Moranbacteria, Parcubacteria, Bacteria

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comp(1902..2981)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003602F73
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Tax=RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated
07M_4_2014_scaffold_1176_3
GWC1_OD1_45_14, Parcubacteria, Bacteria

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comp(3102..3602)
DNA (501bp) protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT94752.1}; TaxID=1618915 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_45_14.;"
no description id=5801519 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
07M_4_2014_scaffold_1176_4
unknown

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comp(3744..4070)
DNA (327bp) protein (109aa)

This feature has no annotations

07M_4_2014_scaffold_1176_5
unknown

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comp(4293..5084)
DNA (792bp) protein (264aa)

This feature has no annotations

07M_4_2014_scaffold_1176_6
unknown

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5351..5947
DNA (597bp) protein (199aa)

This feature has no annotations

07M_4_2014_scaffold_1176_7
R_OD1_42_9, Parcubacteria, Bacteria

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comp(5961..6851)
DNA (891bp) protein (297aa)
Aminodeoxychorismate lyase id=5227111 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
07M_4_2014_scaffold_1176_8

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comp(6854..7960)
DNA (1107bp) protein (369aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR60178.1}; TaxID=1618924 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_40_31.;"
transmembrane_regions id=5803535 bin=OD1_GWC2_34_28 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
07M_4_2014_scaffold_1176_9
GWB1_OD1_43_8, Parcubacteria, Bacteria

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comp(8042..9070)
DNA (1029bp) protein (343aa)
RNA polymerase sigma factor {ECO:0000313|EMBL:KKT19795.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
coiled-coil id=5227114 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
07M_4_2014_scaffold_1176_10
CG_Wolfe_01, Wolfebacteria, Parcubacteria, Bacteria

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comp(9075..11429)
DNA (2355bp) protein (785aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase id=4783216 bin=GWC2_OD1_43_27 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tax=CG_Wolfe_01
07M_4_2014_scaffold_1176_11
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

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11622..12284
DNA (663bp) protein (221aa)
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX); K02616 phenylacetic acid degradation operon negative regulatory protein id=3267 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
PaaX family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
07M_4_2014_scaffold_1176_12
GWA1_OD1_44_25, Giovannonibacteria, Parcubacteria, Bacteria

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comp(12469..13347)
DNA (879bp) protein (293aa)
Kef-type K+ transport system, membrane component {ECO:0000313|EMBL:KKT59302.1}; TaxID=1618645 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_25.;"
fibronectin type III domain-containing protein id=15190463 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein
07M_4_2014_scaffold_1176_13
CG_CPR07_01, CG_CPR07, Bacteria

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13463..14050
DNA (588bp) protein (196aa)
Dolichyl-phosphate-mannose-protein mannosyltransferase, putative id=2130211 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
dolichyl-phosphate-mannose--protein O-mannosyl transferase
Tax=CG_CPR07_01
07M_4_2014_scaffold_1176_14
R_RIF_OD1_05_43_15b, RIF-OD1-5, Parcubacteria, Bacteria

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14007..14447
DNA (441bp) protein (147aa)
Dolichyl-phosphate-mannose-protein mannosyltransferase, putative id=2130211 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
glycosyl transferase family protein
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_05_43_15b_curated
07M_4_2014_scaffold_1176_15
R_OD1_Falkowbacteria_56_16, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14606..14806)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FLW3_9BACT
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_56_16_curated
07M_4_2014_scaffold_1176_16
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(14864..14986)
DNA (123bp) protein (41aa)
Spore coat assembly protein SafA n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2I7_9CLOT id=71536 bin=ACD50 species=Clostridium carboxidivorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
SCP-like protein extracellular {ECO:0000313|EMBL:KKT80971.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
Displaying 16 items

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