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07M_4_2014_scaffold_2025

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_2025_1
unknown

Not on your lists

13..297
DNA (285bp) protein (95aa)

This feature has no annotations

07M_4_2014_scaffold_2025_2
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists


361..1959
DNA (1599bp) protein (533aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase id=4731742 bin=GWC2_OD1_43_27 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
07M_4_2014_scaffold_2025_3
R_RIF_OD1_07_48_27b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

1964..2296
DNA (333bp) protein (111aa)
hypothetical protein id=43708 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_48_27b_curated
07M_4_2014_scaffold_2025_4
R_OD1_52_25, Parcubacteria, Bacteria

Not on your lists

2287..2556
DNA (270bp) protein (90aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_52_25_curated
07M_4_2014_scaffold_2025_5
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

2794..6036
DNA (3243bp) protein (1081aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E22E6
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_2025_6
RIFOXYA2_FULL_OD1_Falkowbacteria_47_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

6029..6472
DNA (444bp) protein (148aa)
Methyltransferase, UbiE/COQ5 family id=2192952 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
SAM-dependent methyltransferase
Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_47_9_curated
07M_4_2014_scaffold_2025_7
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(6712..7266)
DNA (555bp) protein (185aa)
Transcriptional regulator, PaaX family {ECO:0000313|EMBL:KKT21579.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX); K02616 phenylacetic acid degradation operon negative regulatory protein id=3267 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX)
07M_4_2014_scaffold_2025_8
RHI_OD1_Moranbacteria_40_10, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

7386..8030
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2GBZ4_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OD1_Moranbacteria_40_10_curated
07M_4_2014_scaffold_2025_9
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

8406..8948
DNA (543bp) protein (181aa)
DNA repair protein RecO id=5227239 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
DNA repair protein RecO
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
07M_4_2014_scaffold_2025_10

Not on your lists

8956..10851
DNA (1896bp) protein (632aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR60311.1}; TaxID=1618924 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_40_31.;"
transmembrane_regions id=5803285 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
07M_4_2014_scaffold_2025_11
R_OD1_Kaiserbacteria_55_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists


10906..12309
DNA (1404bp) protein (468aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase id=3462369 bin=GWC2_CPR2_39_35 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation rbh
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_55_17_curated
07M_4_2014_scaffold_2025_trna_1
unknown

Not on your lists

12265..12334
DNA (70bp)
transferRNA Glu
07M_4_2014_scaffold_2025_12

Not on your lists

12336..12830
DNA (495bp) protein (165aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW31614.1}; TaxID=1618935 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_52_8c.;"
id=1924383 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
07M_4_2014_scaffold_2025_13
unknown

Not on your lists

12873..13169
DNA (297bp) protein (99aa)

This feature has no annotations

07M_4_2014_scaffold_2025_14
GWC2_OD1-i_45_10, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

13238..13816
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003644974
Repressor in ring oxydation complex/ phenylacetic acid degradation pathway related protein (PaaX) {ECO:0000313|EMBL:KKT88520.1}; TaxID=1618700 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_45_10.;"
repressor in the phenylacetic acid catabolism
07M_4_2014_scaffold_2025_15
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

13894..15216
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037E82AE
peptidase M16 domain-containing protein
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
07M_4_2014_scaffold_2025_16
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

15218..16258
DNA (1041bp) protein (347aa)
hypothetical protein id=5803290 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
07M_4_2014_scaffold_2025_17
R_OD1_Campbellbacteria_34_15, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists


16258..17319
DNA (1062bp) protein (354aa)
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=5803291 bin=OD1_GWC2_34_28 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
methionyl-tRNA synthetase (EC:6.1.1.10)
Tax=RIFCSPLOWO2_01_FULL_OD1_Campbellbacteria_34_15_curated
07M_4_2014_scaffold_2025_18
CG_CPR05_02, CG_CPR05, Bacteria

Not on your lists

17377..18909
DNA (1533bp) protein (511aa)
Radical SAM domain protein id=2883704 bin=GWF2_OP3_43_52 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
radical SAM protein
Tax=CG_CPR05_02
07M_4_2014_scaffold_2025_19
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

18954..19745
DNA (792bp) protein (264aa)
sec-independent protein translocase protein (EC:3.1.21.-); K03424 TatD DNase family protein [EC:3.1.21.-] id=5803293 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Metal-dependent DNase {ECO:0000313|EMBL:KKT18879.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
hydrolase, TatD family
07M_4_2014_scaffold_2025_20
unknown

Not on your lists

19800..20030
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying 21 items

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