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07M_4_2014_scaffold_3859

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Displaying items 1-30 of 37 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_3859_1
CG_Kuenen_01, Kuenenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(142..1263)
DNA (1122bp) protein (374aa)
hypothetical protein id=5101708 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
hypothetical protein
Tax=CG_Kuenen_01
07M_4_2014_scaffold_3859_2
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists


comp(1253..1909)
DNA (657bp) protein (219aa)
50S ribosomal protein L4 {ECO:0000313|EMBL:KKT21565.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 id=5802992 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rplD; 50S ribosomal protein L4
07M_4_2014_scaffold_3859_3
GWA2_OD1_53_7_partial, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(1890..2504)
DNA (615bp) protein (205aa)
50S ribosomal protein L3 {ECO:0000313|EMBL:KKW37145.1}; TaxID=1618650 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_53_7.;"
rplC; Ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5802993 bin=OD1_GWC2_34_28 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
50S ribosomal protein L3
07M_4_2014_scaffold_3859_4
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists


comp(2504..2836)
DNA (333bp) protein (111aa)
30S ribosomal protein S10 {ECO:0000313|EMBL:KKT21563.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 id=5802994 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpsJ; 30S ribosomal protein S10
07M_4_2014_scaffold_3859_5
R_OD1_Giovannonibacteria_46_20, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(2839..4032)
DNA (1194bp) protein (398aa)
Elongation factor Tu id=3736618 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
tuf2; translation elongation factor Tu
Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_46_20_curated
07M_4_2014_scaffold_3859_6
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(4173..6272)
DNA (2100bp) protein (700aa)
Elongation factor G 1 {ECO:0000313|EMBL:KKT21559.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
fusA-3; elongation factor G; K02355 elongation factor G id=5802997 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
fusA2; elongation factor G
07M_4_2014_scaffold_3859_7
R_OD1_39_11, Parcubacteria, Bacteria

Not on your lists

comp(6309..6533)
DNA (225bp) protein (75aa)
hypothetical protein id=1263655 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
Tax=RIFCSPLOWO2_01_FULL_OD1_39_11_curated
07M_4_2014_scaffold_3859_8
GWA2_OD1_44_13b, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(6533..6925)
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT41403.1}; TaxID=1618647 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_13b.;"
Uncharacterized protein id=2232851 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
07M_4_2014_scaffold_3859_9
GWF2_OD1_40_10, Parcubacteria, Bacteria

Not on your lists


comp(6968..7351)
DNA (384bp) protein (128aa)
30S ribosomal protein S7 {ECO:0000313|EMBL:KKR38080.1}; TaxID=1618964 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_40_10.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 id=5803001 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S7
07M_4_2014_scaffold_3859_10

Not on your lists


comp(7351..7740)
DNA (390bp) protein (130aa)
30S ribosomal protein S12 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZU8_9BACT
30S ribosomal protein S12 {ECO:0000313|EMBL:KKS33429.1}; TaxID=1618927 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_13.;"
30S ribosomal protein S12
07M_4_2014_scaffold_3859_11
R_RIF_OD1_12_45_11c, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(7795..8418)
DNA (624bp) protein (208aa)
peptidase M50 id=5803003 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_12_45_11c_curated
07M_4_2014_scaffold_3859_trna_1
unknown

Not on your lists

8649..8735
DNA (87bp)
transferRNA Ser
07M_4_2014_scaffold_3859_12
R_SM2F11_52_17, SM2F11, Bacteria

Not on your lists

8817..9371
DNA (555bp) protein (185aa)
hypothetical protein id=5801442 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
Tax=RIFCSPHIGHO2_01_SM2F11_52_17_curated
07M_4_2014_scaffold_3859_13
RIFOXYD1_FULL_OD1_48_21_curated, Parcubacteria, Bacteria

Not on your lists

9377..9874
DNA (498bp) protein (166aa)
transmembrane_regions 57..74 id=2907 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
Tax=RIFOXYD1_FULL_OD1_48_21_curated
07M_4_2014_scaffold_3859_trna_2
unknown

Not on your lists

9888..9959
DNA (72bp)
transferRNA Arg
07M_4_2014_scaffold_3859_14

Not on your lists


comp(9963..10220)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371EFDE
30S ribosomal protein S20 {ECO:0000313|EMBL:KKS33929.1}; TaxID=1618927 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_13.;"
30S ribosomal protein S20
07M_4_2014_scaffold_3859_15
RIFOXYD1_FULL_OD1_48_21_curated, Parcubacteria, Bacteria

Not on your lists

10426..10593
DNA (168bp) protein (56aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=5803226 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tax=RIFOXYD1_FULL_OD1_48_21_curated
07M_4_2014_scaffold_3859_16
unknown

Not on your lists

10728..11228
DNA (501bp) protein (167aa)

This feature has no annotations

07M_4_2014_scaffold_3859_17
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

11437..11706
DNA (270bp) protein (90aa)
YcfA-like protein n=1 Tax=Thermus oshimai JL-2 RepID=K7R2U1_THEOS
YcfA-like protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
07M_4_2014_scaffold_3859_18
RIFOXYC2_FULL_OD1_Campbellbacteria_35_25_curated, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

11716..12990
DNA (1275bp) protein (425aa)
UDP-N-acetylmuramyl-tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] id=5803224 bin=OD1_GWC2_34_28 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylmuramyl-tripeptide synthetase
Tax=RIFOXYC2_FULL_OD1_Campbellbacteria_35_25_curated
07M_4_2014_scaffold_3859_19
unknown

Not on your lists

comp(12971..13153)
DNA (183bp) protein (61aa)

This feature has no annotations

07M_4_2014_scaffold_3859_20
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

13318..13872
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003615D0F
PaaX family transcrtiptional regulator
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
07M_4_2014_scaffold_3859_21
RBG_13_RIF_OD1_07_38_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

13965..14489
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000374AF65
2'-5' RNA ligase
Tax=RBG_13_RIF_OD1_07_38_11_curated
07M_4_2014_scaffold_3859_22
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

14627..15481
DNA (855bp) protein (285aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase id=2934191 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
07M_4_2014_scaffold_3859_23

Not on your lists

15491..16327
DNA (837bp) protein (279aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR47373.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
seg id=5803223 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
07M_4_2014_scaffold_3859_24
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

16334..16699
DNA (366bp) protein (122aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
07M_4_2014_scaffold_3859_25
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(17013..17969)
DNA (957bp) protein (319aa)
id=5803220 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
07M_4_2014_scaffold_3859_26
Parcubacteria bacterium GW2011_GWA2_47_9, Parcubacteria, Bacteria

Not on your lists

comp(17971..18339)
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU86798.1}; TaxID=1618849 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_9.;"
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain id=2966073 bin=GWA1_ZB2_49_26 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
two component transcriptional regulator, winged helix family
07M_4_2014_scaffold_3859_27
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

Not on your lists

comp(18468..20663)
DNA (2196bp) protein (732aa)
Polymerase protein {ECO:0000313|EMBL:KKR80302.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
DNA polymerase I, thermostable id=2966077 bin=GWA1_ZB2_49_26 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
DNA polymerase I
07M_4_2014_scaffold_3859_28
GWA2_OD1_ACD81_47_9, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(20719..22749)
DNA (2031bp) protein (677aa)
hypothetical protein id=15190336 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Peptidase M23 {ECO:0000313|EMBL:KKU89412.1}; TaxID=1619005 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWA2_47_9b.;"
fibronectin type III domain-containing protein
Displaying items 1-30 of 37 in total

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