ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_389

Search features with annotation key words

Displaying items 1-30 of 222 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_389_1
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(98..817)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JLA5_CELLD
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_2
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(845..1465)
DNA (621bp) protein (207aa)
Radical SAM domain protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JLA4_CELLD
radical SAM protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_3
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1624..1803)
DNA (180bp) protein (60aa)
Radical SAM domain protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JLA4_CELLD
radical SAM protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_4
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2411..3067
DNA (657bp) protein (219aa)
CBS domain pair protein n=1 Tax=Eubacterium sp. CAG:274 RepID=R6P8W0_9FIRM
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_5
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3180..3881)
DNA (702bp) protein (234aa)
Branched-chain amino acid abc transporter, ATP-binding protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TFK9_HELMI rbh
branched-chain amino acid abc transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_6
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3893..4657)
DNA (765bp) protein (255aa)
High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AWH4_CLOA9 rbh
livG1; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_7
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4672..5655)
DNA (984bp) protein (328aa)
Branched-chain amino acid transport system permease protein LivM1 n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LC19_ACEWD
livM1; branched-chain amino acid transport system permease protein LivM1; K01998 branched-chain amino acid transport system permease protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_8
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5665..6546)
DNA (882bp) protein (294aa)
Inner-membrane translocator n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1ALD9_SEBTE rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_9
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6795..8048)
DNA (1254bp) protein (418aa)
ABC transporter branched-chain amino acid-binding protein LivK n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZP0_CLOA9 rbh
livK1; branched-chain amino acid ABC transporter substrate-binding protein LivK rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_10
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8193..8396)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5QS38_9FIRM
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_11
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8467..9171)
DNA (705bp) protein (235aa)
Transcriptional regulator n=1 Tax=Clostridium termitidis CT1112 RepID=S0FKA7_9CLOT
transcriptional regulator; K03710 GntR family transcriptional regulator
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_12
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9286..10026
DNA (741bp) protein (247aa)
Pyruvate formate-lyase activating enzyme n=2 Tax=Arthrospira platensis RepID=D4ZY22_ARTPN
pyruvate formate-lyase activating enzyme
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_13
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10176..10343
DNA (168bp) protein (56aa)
Ferredoxin n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KXG2_9FIRM
ferredoxin
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_14
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10441..10971)
DNA (531bp) protein (177aa)
Transcriptional regulator, MerR family n=1 Tax=Clostridium sp. L2-50 RepID=A7VJ54_9CLOT
Predicted transcriptional regulators
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_15
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11257..11736)
DNA (480bp) protein (160aa)
Putative uncharacterized protein id=2049258 bin=GWD2_Clostridiales_32_59 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65
hypothetical protein; K02422 flagellar protein FliS
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_16
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11750..13144)
DNA (1395bp) protein (465aa)
Flagellin domain protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KL48_CLOPH rbh
flagellin domain-containing protein; K02406 flagellin rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_17
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13277..13390)
DNA (114bp) protein (38aa)
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_18
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13416..15593)
DNA (2178bp) protein (726aa)
Putative uncharacterized protein id=2105099 bin=GWE2_Clostridiales_32_10 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales rbh
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_19
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15878..17197)
DNA (1320bp) protein (440aa)
Putative uncharacterized protein id=2049305 bin=GWD2_Clostridiales_32_59 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65
conserved hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_20
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17374..18585
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CN78_CLOSO rbh
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_21
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18720..18830
DNA (111bp) protein (37aa)
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_22
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19008..20006
DNA (999bp) protein (333aa)
Transcriptional regulator, effector binding domain protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1WLP6_ANEAE rbh
hypothetical protein; K13653 AraC family transcriptional regulator rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_23
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20720..21328)
DNA (609bp) protein (203aa)
Recombination protein RecR n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LW81_9FIRM
recombination protein RecR
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_24
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21331..21687)
DNA (357bp) protein (119aa)
Nucleoid-associated protein A370_00506 n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U754_9CLOT
DNA-binding protein, YbaB/EbfC family
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_25
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21714..23309)
DNA (1596bp) protein (532aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7) rbh
DNA polymerase III, subunits gamma and tau n=2 Tax=Roseburia intestinalis RepID=D4KUB0_9FIRM rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_26
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24163..25005)
DNA (843bp) protein (281aa)
dioxygenase n=1 Tax=Paenibacillus ginsengihumi RepID=UPI000374FA8B rbh
uxuB; UxuB rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_27
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25002..26075)
DNA (1074bp) protein (358aa)
mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8] rbh
Mannonate dehydratase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TMY2_THETC rbh
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_28
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26065..27042)
DNA (978bp) protein (326aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Bacillus sp. 1NLA3E RepID=N0ARR8_9BACI
DMT(drug/metabolite transporter) superfamily permease
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_29
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27082..28380)
DNA (1299bp) protein (433aa)
TRAP transporter, DctM subunit id=4352521 bin=GWC2_Spirochaete_52_13 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
TRAP dicarboxylate transporter subunit DctM
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_389_30
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28380..28910)
DNA (531bp) protein (177aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Clostridium sp. DL-VIII RepID=G7M227_9CLOT
tripartite AtP-independent periplasmic transporter subunit DctQ
Tax=BJP_IG2102_Clostridiales_34_350
Displaying items 1-30 of 222 in total

View Taxonomy