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08E140C01_z5_2013_Ig3399_v2_scaffold_1815

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_trna_1
unknown

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1..72
DNA (72bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_1
unknown

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3..212
DNA (210bp) protein (70aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1815_2
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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223..708
DNA (486bp) protein (162aa)
Ribosome maturation factor RimP n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=RIMP_SYNAS
hypothetical protein; K09748 ribosome maturation factor RimP
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_3
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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772..2034
DNA (1263bp) protein (421aa)
Transcription elongation factor id=2521126 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good + rbh
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A rbh
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_4
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2078..4747
DNA (2670bp) protein (890aa)
Translation initiation factor IF-2 id=2521124 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good + rbh
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 rbh
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_5
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4770..5105
DNA (336bp) protein (112aa)
Hypothetical cytosolic protein id=4026760 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
cytoplasmic protein; K09764 hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_6
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5098..5460
DNA (363bp) protein (121aa)
Ribosome-binding factor A id=3085238 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_7
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5453..6403
DNA (951bp) protein (317aa)
Phosphoesterase, DHH family protein id=4026764 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good + rbh
phosphoesterase, DHH family protein; K06881 phosphoesterase RecJ domain-containing protein rbh
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_8
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6409..7347
DNA (939bp) protein (313aa)
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B id=4026766 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good + rbh
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_9
Smithella sp. F21, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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7396..7662
DNA (267bp) protein (89aa)
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1538640 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. F21.;"
30S ribosomal protein S15 id=4026768 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_10
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7801..9921
DNA (2121bp) protein (707aa)
polynucleotide phosphorylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase id=2520903 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_11
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9992..10453
DNA (462bp) protein (154aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Smithella sp. ME-1 RepID=V4ENX9_9DELT
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_12
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10588..11766
DNA (1179bp) protein (393aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWT6_SYNAS
cytoplasmic protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_13
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11988..12185
DNA (198bp) protein (66aa)
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_14
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12239..12505
DNA (267bp) protein (89aa)
Septum formation initiator n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWT7_SYNAS
septum formation initiator; K05589 cell division protein FtsB
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_15
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12550..13626
DNA (1077bp) protein (359aa)
Pili assembly protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWT8_SYNAS
pili assembly protein; K02662 type IV pilus assembly protein PilM
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_16
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13623..14171
DNA (549bp) protein (183aa)
Pili assembly protein id=4218060 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
pili assembly protein; K02663 type IV pilus assembly protein PilN
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_17
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14174..14935
DNA (762bp) protein (254aa)
Pili assembly protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWT0_SYNAS
pili assembly protein; K02664 type IV pilus assembly protein PilO
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_18
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14910..15443
DNA (534bp) protein (178aa)
Hypothetical exported protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWT1_SYNAS
hypothetical protein; K02665 type IV pilus assembly protein PilP
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_19
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15456..17231
DNA (1776bp) protein (592aa)
Type IV secretion n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWT2_SYNAS
type IV secretion; K02666 type IV pilus assembly protein PilQ
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_20
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17345..18106
DNA (762bp) protein (254aa)
Tetratricopeptide repeat family protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LUM3_SYNAS
hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_21
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18198..18701
DNA (504bp) protein (168aa)
Hypothetical cytosolic protein id=3898957 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_22
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18682..19770
DNA (1089bp) protein (363aa)
Xaa-Pro dipeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9]
Xaa-pro dipeptidase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWS5_SYNAS
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_23
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19789..20184
DNA (396bp) protein (132aa)
Glycine cleavage system H protein id=2520854 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
glycine cleavage system H protein; K02437 glycine cleavage system H protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_1815_24
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20194..20847
DNA (654bp) protein (218aa)
Biotin/lipoate A/B protein ligase id=4091221 bin=GWF2_Syntrophobacterales_56_9 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
lipoate-protein ligase A
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Displaying 25 items

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