ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_3926

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_1
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..387)
DNA (387bp) protein (129aa)
putative arsenite resistance protein ArsB; K03325 arsenite transporter, ACR3 family id=24426364 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_2
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(473..985)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CEI9_DESTA
hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_3
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1012..1431)
DNA (420bp) protein (140aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
Protein tyrosine phosphatase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WRE0_GEOS8
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_4
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1447..2154)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=unclassified candidate division KSB1 RepID=UPI00037ED444
cytochrome c biogenesis protein, transmembrane region
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_5
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2155..2595)
DNA (441bp) protein (147aa)
Thioredoxin domain protein id=4408475 bin=GWF2_OP9_related_35_9 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
trxA; Thioredoxin domain protein; K03671 thioredoxin 1
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_6
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2671..3468)
DNA (798bp) protein (266aa)
coenzyme F420-dependent NADP oxidoreductase; K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
NADP oxidoreductase coenzyme F420-dependent id=2981786 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_7
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3541..4590)
DNA (1050bp) protein (350aa)
Permease id=3522272 bin=GWC2_Ignavibacteria_38_9 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
permease; K07089
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_8
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4605..4841)
DNA (237bp) protein (79aa)
Conserved protein n=2 Tax=Methanosarcina mazei RepID=Q8PYW2_METMA
Thiol-disulfide isomerase and thioredoxins
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_9
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4852..5184)
DNA (333bp) protein (111aa)
Regulatory protein ArsR id=4216632 bin=GWF2_OP9-related_38_17 species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_10
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5377..5529
DNA (153bp) protein (51aa)
Lipoprotein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VNX3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AJY71986.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
ErfK/YbiS/YcfS/YnhG family protein
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_11
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5664..5882
DNA (219bp) protein (73aa)
Putative uncharacterized protein id=4602272 bin=GWF2_Syntrophobacterales_56_9 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_12
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5889..6170
DNA (282bp) protein (94aa)
Putative uncharacterized protein id=4602181 bin=GWF2_Syntrophobacterales_56_9 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_13
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6390..8681)
DNA (2292bp) protein (764aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IMN4_9PLAN
transcriptional accessory protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
08E140C01_z5_2013_Ig3399_v2_scaffold_3926_14
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8855..10558
DNA (1704bp) protein (568aa)
sensory box sensor histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] id=1242546 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
PAS/PAC sensor hybrid histidine kinase
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
Displaying 14 items

View Taxonomy