ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_1207

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_1
unknown

Not on your lists

comp(1..171)
DNA (171bp) protein (57aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1207_2
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

311..1084
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SNG7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EZH71709.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein; K07090
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_3
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

1106..2983
DNA (1878bp) protein (626aa)
Acetyl-coenzyme A synthetase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z8G0_MELRP
acetyl-coenzyme A synthetase
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:AFN75440.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_4
unknown

Not on your lists

comp(3183..3611)
DNA (429bp) protein (143aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1207_5
unknown

Not on your lists

comp(3788..5134)
DNA (1347bp) protein (449aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1207_6
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5141..5734)
DNA (594bp) protein (198aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2J6D3_9FIRM
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:KJS05346.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_7
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(5734..7875)
DNA (2142bp) protein (714aa)
Ribonuclease R id=3977849 bin=GWF2_Ignavibacteria_33_9 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
ribonuclease R
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_8
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(7877..9958)
DNA (2082bp) protein (694aa)
Diguanylate cyclase id=5004873 bin=GWA2_Ignavibacteria-rel_35_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
Diguanylate cyclase Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
diguanylate cyclase
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_9
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(10050..11024)
DNA (975bp) protein (325aa)
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_10
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(11179..11607)
DNA (429bp) protein (143aa)
ndk; nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
ndk; nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase id=5004870 bin=GWA2_Ignavibacteria-rel_35_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_11
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(11646..12545)
DNA (900bp) protein (300aa)
succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] rbh
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SCS7_PELPB rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_12
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12634..16971
DNA (4338bp) protein (1446aa)
histidine kinase n=1 Tax=Clostridium sp. JC122 RepID=UPI000289ADFE
Contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16890.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
histidine kinase
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_13
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16961..18067
DNA (1107bp) protein (369aa)
senX3; signal-transduction histidine kinase SenX3 (EC:2.7.13.3) rbh
Signal-transduction histidine kinase SenX3 {ECO:0000313|EMBL:AGF54177.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AGF54177.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Signal-transduction histidine kinase SenX3 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MRF9_9CLOT rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_14
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

18143..18658
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00036B5801
flavodoxin
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_15
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(18701..19294)
DNA (594bp) protein (198aa)
NusB antitermination factor id=4663979 bin=GWF2_Ignavibacteria_33_9 species=Indibacter alkaliphilus genus=Indibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
NusB antitermination factor Tax=GWF2_RIF_IGX_33_9_curated
NusB antitermination factor
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_16
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

19446..20198
DNA (753bp) protein (251aa)
Sir2 family transcriptional regulator; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent deacetylase id=4939887 bin=GWA2_Ignavibacteria-rel_35_8 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_17
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

20195..20569
DNA (375bp) protein (125aa)
holo-(acyl-carrier-protein) synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
holo-(acyl-carrier-protein) synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
Holo-[acyl-carrier-protein] synthase id=4939888 bin=GWA2_Ignavibacteria-rel_35_8 species=Clostridium cellulolyticum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_18
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

20570..21328
DNA (759bp) protein (253aa)
RNA methyltransferase, TrmH family, group 3 id=1940269 bin=GWB2_Ignavibacteria_35_12 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
RNA methyltransferase, TrmH family, group 3 Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
TrmH family RNA methyltransferase
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_19
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(21315..22817)
DNA (1503bp) protein (501aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family id=4741289 bin=GWA2_Ignavibacteria-rel_35_8 species=Thermanaerovibrio velox genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria rbh
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein; K02030 polar amino acid transport system substrate-binding protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein; K02030 polar amino acid transport system substrate-binding protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_20
GWC2_OP11_40_12, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(22821..23666)
DNA (846bp) protein (282aa)
Amino acid transporter ATP-binding protein id=4741288 bin=GWA2_Ignavibacteria-rel_35_8 species=Acetobacter tropicalis genus=Acetobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria rbh
Amino acid transporter ATP-binding protein {ECO:0000313|EMBL:KKR41437.1}; TaxID=1618431 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWC2_40_12.;"
Gln/Arg/Lys/His transport ATP-binding protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_21
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(23772..24485)
DNA (714bp) protein (238aa)
Outer membrane protein, OmpA family id=2066168 bin=GWB2_Ignavibacteria_35_12 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
ompA; OmpA family outer membrane protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
tpn50; OmpA family outer membrane protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_22
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(24497..25456)
DNA (960bp) protein (320aa)
NACHT and WD40 domain protein id=4663538 bin=GWA2_Ignavibacteria-rel_35_8 species=Talaromyces marneffei genus=Talaromyces taxon_order=Eurotiales taxon_class=Eurotiomycetes phylum=Ascomycota tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria rbh
WD repeat-containing protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
serine/threonine protein kinase with WD40 repeats
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_23
RBG_16_RIF05_58_8_curated, RIF5, Bacteria

Not on your lists

comp(25517..25894)
DNA (378bp) protein (126aa)
transcriptional regulator n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B4D750
MerR family transcriptional regulator Tax=RBG_16_RIF05_58_8_curated
MerR family transcriptional regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_24
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

26021..26326
DNA (306bp) protein (102aa)
Chemotaxis protein histidine kinase and related kinases id=2066130 bin=GWB2_Ignavibacteria_35_12 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_25
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(26380..27126)
DNA (747bp) protein (249aa)
Outer membrane assembly lipoprotein YfiO id=2207371 bin=GWB2_Ignavibacteria_35_12 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
DNA uptake lipoprotein; K05807 putative lipoprotein
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_trna_2
unknown

Not on your lists

comp(27204..27287)
DNA (84bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_26
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

27404..28504
DNA (1101bp) protein (367aa)
Putative uncharacterized protein id=2177221 bin=GWB2_Ignavibacteria_35_12 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
prolyl-tRNA synthetase Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
prolyl-tRNA synthetase
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_27
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

28507..29559
DNA (1053bp) protein (351aa)
Membrane protein involved in aromatic hydrocarbon degradation id=2177220 bin=GWB2_Ignavibacteria_35_12 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
membrane protein involved in aromatic hydrocarbon degradation Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1207_28
unknown

Not on your lists

29574..29873
DNA (300bp) protein (100aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1207_29
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(29870..31216)
DNA (1347bp) protein (449aa)
Divalent cation transporter n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AY12_SYNWW rbh
divalent cation transporter; K06213 magnesium transporter rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
Displaying items 1-30 of 38 in total

View Taxonomy