ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_3743

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_1
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

1..402
DNA (402bp) protein (134aa)
lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
lipoic acid synthetase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase id=2017504 bin=GWB2_Ignavibacteria_35_12 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_2
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

383..1186
DNA (804bp) protein (268aa)
Beta-lactamase domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SEE4_RHOMR
beta-lactamase domain-containing protein; K06167 PhnP protein
Beta-lactamase domain protein {ECO:0000313|EMBL:AEN72136.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_3
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

1183..1593
DNA (411bp) protein (137aa)
OsmC family protein id=2224497 bin=GWA2_Ignavibacteria-rel_35_8 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
redox protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
redox protein, regulator of disulfide bond formation; K07397 putative redox protein
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_4
unknown

Not on your lists

1669..2229
DNA (561bp) protein (187aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_3743_5
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

2257..3750
DNA (1494bp) protein (498aa)
Sodium:dicarboxylate symporter id=4617732 bin=GWF2_Ignavibacteria_35_20 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
sodium:dicarboxylate symporter
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_6
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

3747..4280
DNA (534bp) protein (178aa)
Putative uncharacterized protein id=3907515 bin=GWA2_Ignavibacteria-rel_35_8 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
hypothetical protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_7
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

4277..5026
DNA (750bp) protein (250aa)
ial:IALB_3100 tpiA; triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] id=719758 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
tpiA; triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
triosephosphate isomerase Tax=GWB2_Ignavibacteria_35_6b_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_8
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

5026..5616
DNA (591bp) protein (197aa)
ial:IALB_1327 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] id=719365 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase Tax=RBG_13_Ignavibacteria_36_8_curated
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_9
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5788..6072
DNA (285bp) protein (95aa)
DNA-binding protein HU-beta n=4 Tax=Elizabethkingia RepID=H0KQ04_9FLAO
DNA-binding protein {ECO:0000313|EMBL:KGO10308.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
huP-2; DNA-binding protein HU; K03530 DNA-binding protein HU-beta
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_10
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

6152..7042
DNA (891bp) protein (297aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:ACI21263.1}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:ACI21263.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
Aspartate carbamoyltransferase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YLE0_THEYD
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_11
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

7026..7880
DNA (855bp) protein (285aa)
Methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase id=3907521 bin=GWA2_Ignavibacteria-rel_35_8 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
methyltransferase Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_12
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

7985..8347
DNA (363bp) protein (121aa)
Stage II sporulation protein id=1903693 bin=GWB2_Ignavibacteria_35_12 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
anti-sigma-factor antagonist Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
anti-anti-sigma factor
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_13
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

8368..9147
DNA (780bp) protein (260aa)
Outer membrane transport energization protein ExbB id=4316555 bin=GWF2_Ignavibacteria_33_9 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
MotA/TolQ/ExbB proton channel family protein; K03561 biopolymer transport protein ExbB Tax=GWF2_RIF_IGX_33_9_curated
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_14
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

9168..9677
DNA (510bp) protein (170aa)
Putative uncharacterized protein id=4316554 bin=GWF2_Ignavibacteria_33_9 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
biopolymer transport protein ExbD/TolR
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_15
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

9721..10302
DNA (582bp) protein (194aa)
Biopolymer transport protein ExbD/TolR id=3907525 bin=GWA2_Ignavibacteria-rel_35_8 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
biopolymer transport protein ExbD/TolR Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
biopolymer transport protein ExbD/TolR
08E140C01_z5_2013_Ig3399_v2_scaffold_3743_16
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

10302..11075
DNA (774bp) protein (258aa)
TonB-like protein id=4316552 bin=GWF2_Ignavibacteria_33_9 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
TonB family protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
Displaying 16 items

View Taxonomy