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08E140C01_z5_2013_Ig3399_v2_scaffold_1268

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_1
unknown

Not on your lists

3..236
DNA (234bp) protein (78aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1268_2
Pan troglodytes, Pan, Primates, Mammalia, Chordata, Metazoa

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414..2105
DNA (1692bp) protein (564aa)
PREDICTED: lysine-rich arabinogalactan protein 19-like n=1 Tax=Setaria italica RepID=UPI00035111E2
lysine-rich arabinogalactan protein 19-like
Nuclear pore complex interacting protein {ECO:0000313|EMBL:BAK62200.1}; TaxID=9598 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan.;" source="Pan troglodytes (Chimpanzee).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_3
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

2183..2776
DNA (594bp) protein (198aa)
PE-PGRS family protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EQX3_SORC5
PE-PGRS family protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_4
Halomonas salina, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2789..4423)
DNA (1635bp) protein (545aa)
transporter n=1 Tax=Halomonas smyrnensis RepID=UPI0002F4BEE8 rbh
Transporter {ECO:0000313|EMBL:KGE78305.1}; TaxID=42565 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas salina.;"
putative symporter YidK; K03307 solute:Na+ symporter, SSS family rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_5
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4627..6099)
DNA (1473bp) protein (491aa)
sensor histidine kinase (EC:2.7.3.-) rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Sensor histidine kinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FTW6_SORC5 rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_6
unknown

Not on your lists

comp(6096..6329)
DNA (234bp) protein (78aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1268_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6417..7715)
DNA (1299bp) protein (433aa)
Adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3]
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y8U0_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AGP39273.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8291..10150
DNA (1860bp) protein (620aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y197_SORCE rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF08976.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10226..11236
DNA (1011bp) protein (337aa)
ATPase AAA n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XHU0_SORCE rbh
ATPase AAA rbh
ATPase AAA {ECO:0000313|EMBL:AGP32707.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_10
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11253..12188
DNA (936bp) protein (312aa)
von Willebrand factor type A n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y484_SORCE rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF08978.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
von Willebrand factor type A rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_11
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12196..14088
DNA (1893bp) protein (631aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GBN3_SORC5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF08979.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14085..16880
DNA (2796bp) protein (932aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y387_SORCE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGP39269.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_13
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(16891..18573)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YCS2_SORCE
hypothetical protein Tax=RBG_13_Ignavibacteria_36_8_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_14
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18723..20003)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y2D6_SORCE
Uncharacterized protein {ECO:0000313|EMBL:EYF07884.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_15
unknown

Not on your lists

20226..21806
DNA (1581bp) protein (527aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1268_16
unknown

Not on your lists

comp(21827..23617)
DNA (1791bp) protein (597aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1268_17
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23770..24795)
DNA (1026bp) protein (342aa)
RimK-like ATP-grasp domain superfamily; K03802 cyanophycin synthetase [EC:6.-.-.-]
Cyanophycin synthetase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FWY7_9DELT
Cyanophycin synthetase {ECO:0000313|EMBL:EDM81811.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_18
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24847..25527)
DNA (681bp) protein (227aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source=
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] rbh
Adenylate kinase id=1794884 bin=GWB2_Desulfobacterales_56_26 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_trna_1
unknown

Not on your lists

25695..25776
DNA (82bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_19
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25878..27233)
DNA (1356bp) protein (452aa)
Probable integrase/recombinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GFX2_SORC5
integrase/recombinase
Probable integrase/recombinase {ECO:0000313|EMBL:CAN96248.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1268_20
unknown

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comp(27233..27814)
DNA (582bp) protein (194aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1268_21
unknown

Not on your lists

comp(27895..28353)
DNA (459bp) protein (153aa)

This feature has no annotations

Displaying 22 items

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