ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_1525

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_1
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1155
DNA (1155bp) protein (385aa)
Pe-pgrs family protein n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NNY9_9RHOB
PE-PGRS family protein {ECO:0000313|EMBL:EYF07738.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
PE-PGRS family protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_2
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1165..3810)
DNA (2646bp) protein (882aa)
DNA mismatch repair protein MutS n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XWV0_SORCE rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
DNA mismatch repair protein MutS rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3824..6565)
DNA (2742bp) protein (914aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GIM7_SORC5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAN93287.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6562..7953)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XV42_SORCE rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF02806.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_5
unknown

Not on your lists

comp(8334..8513)
DNA (180bp) protein (60aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1525_6
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8673..9971
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F3P8_SORC5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF05275.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_7
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9973..10959
DNA (987bp) protein (329aa)
regulatory protein; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
Putative regulatory protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F3Q2_SORC5 rbh
MoxR-like ATPase {ECO:0000313|EMBL:EYF05274.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10966..12600
DNA (1635bp) protein (545aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y0Y0_SORCE rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF05273.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12600..13469
DNA (870bp) protein (290aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XZT8_SORCE
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_10
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13485..14675)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000378EB65
Uncharacterized protein {ECO:0000313|EMBL:KHE92528.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_11
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14743..15189)
DNA (447bp) protein (149aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
Peptidyl-prolyl cis-trans isomerase id=1941261 bin=GWD2_Nitrospirae-related_57_8 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
FKBP-type peptidylprolyl isomerase
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_12
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15423..16718)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GUM5_SORC5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYF02903.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_13
unknown

Not on your lists

16843..17103
DNA (261bp) protein (87aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1525_14
R_Gammaproteobacteria_60_43, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17106..17594)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B4CCB9
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_60_43_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_15
unknown

Not on your lists

17702..18148
DNA (447bp) protein (149aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1525_16
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(18151..18909)
DNA (759bp) protein (253aa)
Integral membrane protein-like n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AWH4_HERA2
hypothetical protein
Integral membrane protein-like {ECO:0000313|EMBL:ABX06733.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_17
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18962..20677)
DNA (1716bp) protein (572aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XSC3_SORCE
Uncharacterized protein {ECO:0000313|EMBL:EYF02992.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_18
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20683..22608
DNA (1926bp) protein (642aa)
Subtilase family peptidase n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WLB8_METH6
Serine protease, subtilase family {ECO:0000313|EMBL:AKF10556.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
subtilase family peptidase
08E140C01_z5_2013_Ig3399_v2_scaffold_1525_19
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

22787..24316
DNA (1530bp) protein (510aa)
glutamyl-tRNA(Gln) amidotransferase subunit E; K03330 glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7]
Glutamyl-tRNA(Gln) amidotransferase subunit E id=4204265 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
Tax=BJP_IG2103_Bacteroidetes_41_9
Displaying 19 items

View Taxonomy