ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_2492

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_1
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..622
DNA (621bp) protein (207aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LQH9_SYNFM
hydrogenase expression/formation protein HypE; K04655 hydrogenase expression/formation protein HypE
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:ABK19681.1}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_2
BJP_08E140C01_Actinomycetales_67_18, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

646..996
DNA (351bp) protein (117aa)
Macrophage migration inhibitory factor (MIF) n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WB54_9CYAN
Macrophage migration inhibitory factor (MIF)
Tax=BJP_08E140C01_Actinomycetales_67_18
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1351..2595
DNA (1245bp) protein (415aa)
TPR-like protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FG57_SORC5 rbh
hypothetical protein rbh
TPR-like protein {ECO:0000313|EMBL:CAN98089.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_4
unknown

Not on your lists

2911..3573
DNA (663bp) protein (221aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_2492_5
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

3879..4805
DNA (927bp) protein (309aa)
radical SAM domain-containing protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4]
Radical SAM domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRC3_OPITP
Radical SAM domain protein {ECO:0000313|EMBL:ACB74610.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_6
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5087..6340
DNA (1254bp) protein (418aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
Transcription termination factor Rho n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FGA5_SORC5 rbh
rho; transcription termination factor Rho; K03628 transcription termination factor Rho rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6827..8935)
DNA (2109bp) protein (703aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XNT4_SORCE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGP34847.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_8
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9298..10098
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IVE3_9BACT
hypothetical protein Tax=RifOxyA12_full_Proteobacteria_58_15_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10192..12879
DNA (2688bp) protein (896aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779, ECO:0000313|EMBL:CAN95297.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] rbh
ValS protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FRI6_SORC5 rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_10
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12923..13627)
DNA (705bp) protein (235aa)
gidB; glucose-inhibited division protein (EC:2.1.-.-); K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G {ECO:0000255|HAMAP-Rule:MF_00074}; EC=2.1.1.170 {ECO:0000255|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; Short=16S rRNA m7G methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=RSMG_SORC5
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_11
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13896..15044
DNA (1149bp) protein (383aa)
Conserved uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08PQ6_STIAD
Uncharacterized protein {ECO:0000313|EMBL:EYF05807.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_12
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15044..15880
DNA (837bp) protein (279aa)
Ser/Thr protein phosphatase family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08PQ5_STIAD
Ser/Thr protein phosphatase family protein {ECO:0000313|EMBL:EAU62466.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_13
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15877..16134
DNA (258bp) protein (86aa)
Metallophosphoesterase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MUQ1_CORCM
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:AFE07734.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_14
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16239..17273)
DNA (1035bp) protein (345aa)
Protein RecA n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G764_SORC5 rbh
recA1; RecA protein rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17367..18920)
DNA (1554bp) protein (518aa)
Predicted ATPase with chaperone activity, ComM homolog n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G762_SORC5 rbh
ATPase with chaperone activity, ComM-like protein; K07391 magnesium chelatase family protein rbh
Predicted ATPase with chaperone activity, ComM homolog {ECO:0000313|EMBL:CAN92782.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_16
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19104..20177
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UKR1_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:EYF08789.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_17
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20529..22007
DNA (1479bp) protein (493aa)
Probable serine protease n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8S0_SORC5 rbh
Serine protease MucD/AlgY associated with sigma factor RpoE {ECO:0000313|EMBL:EYF08642.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
serine protease rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_18
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

22518..23717
DNA (1200bp) protein (400aa)
YGEW id=3859975 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Morganella morganii genus=Morganella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Aspartate/ornithine carbamoyltransferase family protein YgeW Tax=GWB1_Bdellovibrionales_55_8_curated
aspartate/ornithine carbamoyltransferase
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_19
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24048..25505
DNA (1458bp) protein (486aa)
protein kinase (EC:2.7.11.1)
Protein kinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9ER29_SORC5
Serine/threonine protein kinase {ECO:0000313|EMBL:EYF04474.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2492_20
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25620..26186
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XZP4_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP36098.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Displaying 20 items

View Taxonomy