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08E140C01_z5_2013_Ig3399_v2_scaffold_825

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_825_1
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(325..1740)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XP75_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33625.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_2
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2021..3412
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FHG4_SORC5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAN98213.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_3
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3507..3884
DNA (378bp) protein (126aa)
Two component response regulator n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FUW1_SORC5
Diguanylate cyclase {ECO:0000313|EMBL:EYF01662.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
two component response regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_825_4
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3918..4301)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y174_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AKF09822.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_5
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4362..5882)
DNA (1521bp) protein (507aa)
Probable outer membrane protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FFG8_SORC5
Type I secretion outer membrane protein, TolC {ECO:0000313|EMBL:AKF10459.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
outer membrane protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_6
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5875..7080)
DNA (1206bp) protein (402aa)
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
ABC-type transporter, permease component id=2096213 bin=GWB2_Desulfobacterales_56_26 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein; K02004 putative ABC transport system permease protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_7
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7077..7784)
DNA (708bp) protein (236aa)
ABC transporter ATP-binding commponent n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWC1_SYNAS
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
ABC transporter ATP-binding commponent {ECO:0000313|EMBL:ABC78384.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7781..9100)
DNA (1320bp) protein (440aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BUZ6_NITHN
Macrolide-specific efflux protein MacA {ECO:0000313|EMBL:EYF08494.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_9
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9285..9512)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G7V0_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EDM78043.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_10
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9509..10084)
DNA (576bp) protein (192aa)
RNA polymerase sigma-70 factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G7V1_9DELT
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDM78044.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_11
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10101..12500)
DNA (2400bp) protein (800aa)
von Willebrand factor, type A n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G7V2_9DELT rbh
von Willebrand factor, type A {ECO:0000313|EMBL:EDM78045.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
vault protein inter-alpha-trypsin subunit; K07114 uncharacterized protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_12
Serendipita vermifera, Serendipita, Sebacinales, Agaricomycetes, Basidiomycota, Fungi

Not on your lists

comp(12619..14856)
DNA (2238bp) protein (746aa)
Peptidase C14 n=1 Tax=Thanatephorus cucumeris (strain AG1-IA) RepID=L8WQH9_THACA
Uncharacterized protein {ECO:0000313|EMBL:KIM19969.1}; TaxID=933852 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Sebacinales; Sebacinales group B; Serendipita.;" source="Serendipita vermifera MAFF 305830.;"
WD40 repeat-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_13
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15022..15843)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GBU8_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF08955.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_14
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16123..17289
DNA (1167bp) protein (389aa)
Putative secreted protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FP84_SORC5
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:CAN92033.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_15
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17310..18917)
DNA (1608bp) protein (536aa)
Putative secreted protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G4H8_SORC5
Tryptophan synthase alpha chain {ECO:0000313|EMBL:AKF09183.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_825_16
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19021..20838)
DNA (1818bp) protein (606aa)
Beta-lactamase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J4L1_HALJB
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ADJ13573.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 /; KCTC 4019 / B3).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_17
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20835..22415)
DNA (1581bp) protein (527aa)
Pc22g03720 protein n=1 Tax=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) RepID=B6HRS8_PENCW
Pc22g03720
Radical SAM domain protein {ECO:0000313|EMBL:EHJ48038.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_18
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22415..24316)
DNA (1902bp) protein (634aa)
Regulator of chromosome condensation RCC1 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G4X1_CHLAD
chromosome condensation regulator RCC1
regulator of chromosome condensation, RCC1 Tax=CG_Delta_07
08E140C01_z5_2013_Ig3399_v2_scaffold_825_19
Pseudomonas sp. GM25, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24607..25449
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM25 RepID=J2X778_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM24428.1}; Flags: Precursor;; TaxID=1144327 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM25.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_20
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25473..26747
DNA (1275bp) protein (425aa)
CtpA-like serine protease {ECO:0000313|EMBL:AGC68197.1}; EC=3.4.21.- {ECO:0000313|EMBL:AGC68197.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_21
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(26703..28676)
DNA (1974bp) protein (658aa)
acylase n=1 Tax=Schlesneria paludicola RepID=UPI00029A1AFB rbh
acylase and diesterase; K06978 Tax=CG_Arma_01
acylase and diesterase; K06978 rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_825_22
unknown

Not on your lists

comp(28736..29011)
DNA (276bp) protein (92aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_825_23
unknown

Not on your lists

comp(29107..29745)
DNA (639bp) protein (213aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_825_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(29796..32969)
DNA (3174bp) protein (1058aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] rbh
Carbamoyl-phosphate synthase large chain n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF07_CHLTF rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_825_25
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32966..34108)
DNA (1143bp) protein (381aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain {ECO:0000255|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000255|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000255|HAMAP-Rule:MF_01209}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=CARA_PELCD
08E140C01_z5_2013_Ig3399_v2_scaffold_825_26
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34286..34672
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YDY7_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP40993.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_27
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34676..35368)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EVX9_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN94267.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(35532..36155)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PDV0_9CYAN id=5225296 bin=16ft_combo_ws3_JS1 species=Calothrix sp. PCC 7507 genus=Calothrix taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_825_29

Not on your lists

comp(36152..36856)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BFA4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD79030.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_825_30
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37697..38125
DNA (429bp) protein (143aa)
Transcriptional regulator, MerR family n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G0W6_SORC5
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CAN92444.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Displaying items 1-30 of 33 in total

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