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08E140C01_z5_2013_Ig3399_v2_scaffold_1292

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_1
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3..170
DNA (168bp) protein (56aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
Argininosuccinate lyase n=1 Tax=Galbibacter marinus RepID=K2QJC6_9FLAO
argininosuccinate lyase
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_2
unknown

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comp(202..816)
DNA (615bp) protein (205aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1292_3
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

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1077..2237
DNA (1161bp) protein (387aa)
id=2190247 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
Tax=BJP_IG2102_Bacteroidetes_40_9
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_4
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

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2368..4254
DNA (1887bp) protein (629aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00037B0D4D rbh
ABC transporter ATPase Tax=GWF2_Bacteroidetes_41_31_curated
abc transporter related protein; K15738 ATP-binding cassette, subfamily F, uup rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_5
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(4349..5503)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=unclassified candidate division KSB1 RepID=UPI00037AD0C5
Putative uncharacterized protein Tax=GWE2_Bacteroidetes_32_14_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_6
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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5617..5817
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Pontibacter sp. BAB1700 RepID=J0LGY9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EJF11020.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_7
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(5951..6940)
DNA (990bp) protein (330aa)
dihydrouridine synthase n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029AE56F
tRNA-u20a,u20b-dihydrouridine synthase Tax=GWA2_Bacteroidetes_31_9_curated
tRNA-dihydrouridine synthase
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_8
CG_Bacteroid_02, Bacteroidetes, Bacteria

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7026..8264
DNA (1239bp) protein (413aa)
DEAD/DEAH box helicase domain-containing protein; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=CG_Bacteroid_02
DEAD/DEAH box helicase domain-containing protein; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein id=3162512 bin=GWF2_Bacteroidetes_42_66 species=Emticicia oligotrophica genus=Emticicia taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_9
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8407..8823
DNA (417bp) protein (139aa)
MgtC/SapB transporter n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCZ7_FLAJ1
Magnesium transporter MgtC {ECO:0000313|EMBL:KIA97081.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_10
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8923..9921)
DNA (999bp) protein (333aa)
threonine dehydratase-like protein; K01754 threonine dehydratase [EC:4.3.1.19] rbh
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6HKD8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EPJ49339.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_11
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(9949..11067)
DNA (1119bp) protein (373aa)
putative aminotransferase (EC:2.6.1.-)
aspartate aminotransferase n=1 Tax=Kiloniella laminariae RepID=UPI00036456AF rbh
Aspartate aminotransferase {ECO:0000313|EMBL:EZH74079.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_12
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(11071..12027)
DNA (957bp) protein (319aa)
putative cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12] rbh
Putative cyclodeaminase n=1 Tax=Osedax symbiont Rs2 RepID=S6GN36_9GAMM rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:EZH74078.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_13
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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12277..12909
DNA (633bp) protein (211aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; Flags: Precursor;; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 /; NCIMB 1366 / Sio-4).;"
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00035E8907
methionine-S-sulfoxide reductase
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_14
unknown

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comp(13099..14070)
DNA (972bp) protein (324aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1292_15
unknown

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comp(14191..14928)
DNA (738bp) protein (246aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1292_16
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(15291..16487)
DNA (1197bp) protein (399aa)
Tetratricopeptide repeat protein id=4115948 bin=GWF2_Bacteroidetes_41_31 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_17
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists


comp(16582..19125)
DNA (2544bp) protein (848aa)
DNA gyrase subunit alpha; K02469 DNA gyrase subunit A [EC:5.99.1.3] rbh
DNA gyrase subunit A n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C701_SPHS2 rbh
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_18
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

19460..22015
DNA (2556bp) protein (852aa)
ATPase AAA-2 domain protein id=2037375 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes rbh
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_19
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22219..24027
DNA (1809bp) protein (603aa)
acyl-CoA dehydrogenase domain protein Tax=GWA2_Bacteroidetes_31_9_curated
Acyl-CoA dehydrogenase domain-containing protein id=1856708 bin=GWD2_Bacteroidetes_33_33 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152 rbh
acyl-CoA dehydrogenase domain-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_20
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

comp(24095..25240)
DNA (1146bp) protein (382aa)
acyl-CoA dehydrogenase domain-containing protein (EC:1.3.99.3); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
Acyl-CoA dehydrogenase id=2666353 bin=GWF2_Bacteroidetes_38_335 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
Tax=BJP_IG2103_Bacteroidetes_37_22
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_21
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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25478..26581
DNA (1104bp) protein (368aa)
alcohol dehydrogenase; K00001 alcohol dehydrogenase [EC:1.1.1.1]
Alcohol dehydrogenase n=1 Tax=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) RepID=Q9X022_THEMA
iron-containing alcohol dehydrogenase Tax=RBG_13_Ignavibacteria_36_8_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_22
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

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comp(26594..27196)
DNA (603bp) protein (201aa)
id=4115971 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Tax=BJP_IG2103_Bacteroidetes_37_22
08E140C01_z5_2013_Ig3399_v2_scaffold_1292_23
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(27576..28049)
DNA (474bp) protein (158aa)
fkpA; FKBP-type peptidylprolyl isomerase (EC:5.2.1.8); K03772 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase id=2998248 bin=GWF2_Bacteroidetes_43_11 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
Tax=BJP_IG2103_Bacteroidetes_41_9
Displaying 23 items

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